miRNA display CGI


Results 1 - 20 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 5' -60.1 NC_001847.1 + 56613 1.07 0.001581
Target:  5'- uCGCGUCUUCCGGCGACACCAGCCGCGc -3'
miRNA:   3'- -GCGCAGAAGGCCGCUGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 91766 0.8 0.121536
Target:  5'- cCGCGggcgCUccgUCGGCGGCGCUGGCCGCGg -3'
miRNA:   3'- -GCGCa---GAa--GGCCGCUGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 46192 0.8 0.134436
Target:  5'- aCGCGguagCggCCGGCGGCggccgccgccggGCCGGCCGCGg -3'
miRNA:   3'- -GCGCa---GaaGGCCGCUG------------UGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 71463 0.79 0.144926
Target:  5'- gGCG-CUUCCGGgGGCAUggCGGCCGCGa -3'
miRNA:   3'- gCGCaGAAGGCCgCUGUG--GUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 97003 0.79 0.15233
Target:  5'- aGCGgg--UCGGCGGCGCUGGCCGCGg -3'
miRNA:   3'- gCGCagaaGGCCGCUGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 93759 0.77 0.185478
Target:  5'- gCGCGgCUgCCGGCGGCGgcCCGGCCGCc -3'
miRNA:   3'- -GCGCaGAaGGCCGCUGU--GGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 5393 0.77 0.194707
Target:  5'- aGCGg---CCGGCGGCACaGGCCGCGc -3'
miRNA:   3'- gCGCagaaGGCCGCUGUGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 41306 0.77 0.19947
Target:  5'- gCGCGacgUUUCCGGCGcCGCCGGCCGg- -3'
miRNA:   3'- -GCGCa--GAAGGCCGCuGUGGUCGGCgc -5'
6445 5' -60.1 NC_001847.1 + 51007 0.77 0.204334
Target:  5'- gCGCGUCaagaugcggUUgCGGCGGCAUCGGCUGCa -3'
miRNA:   3'- -GCGCAG---------AAgGCCGCUGUGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 79203 0.77 0.209301
Target:  5'- uGCGcauUCUgggCUcGCGACGCCGGCCGCGg -3'
miRNA:   3'- gCGC---AGAa--GGcCGCUGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 39835 0.77 0.209301
Target:  5'- aGCG-CUUCCugcguGGCGcGCGCCAGCCGCc -3'
miRNA:   3'- gCGCaGAAGG-----CCGC-UGUGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 66164 0.76 0.214372
Target:  5'- cCGCuGUCUcCCGGgcUGGCGCCGGCCGCc -3'
miRNA:   3'- -GCG-CAGAaGGCC--GCUGUGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 102543 0.76 0.219548
Target:  5'- cCGUGUCggCC-GCGACGgCGGCCGCGa -3'
miRNA:   3'- -GCGCAGaaGGcCGCUGUgGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 99051 0.76 0.22483
Target:  5'- gCGCGUCg-CCGcGCucCGCCAGCCGCGc -3'
miRNA:   3'- -GCGCAGaaGGC-CGcuGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 85240 0.76 0.235717
Target:  5'- gGCGg---CCGGCGGCGCCAGgUGCGc -3'
miRNA:   3'- gCGCagaaGGCCGCUGUGGUCgGCGC- -5'
6445 5' -60.1 NC_001847.1 + 104109 0.76 0.235717
Target:  5'- gCGaCGUCggCCGGCGuuGCCGGCgCGCGc -3'
miRNA:   3'- -GC-GCAGaaGGCCGCugUGGUCG-GCGC- -5'
6445 5' -60.1 NC_001847.1 + 9724 0.76 0.241325
Target:  5'- gCGgGUCcUCCGGCGGCGCCGgggcagucGCCGuCGg -3'
miRNA:   3'- -GCgCAGaAGGCCGCUGUGGU--------CGGC-GC- -5'
6445 5' -60.1 NC_001847.1 + 55504 0.75 0.247044
Target:  5'- aCGUGggccCUgcugCUGGCGGCGCCcGCCGCGg -3'
miRNA:   3'- -GCGCa---GAa---GGCCGCUGUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 53859 0.75 0.258818
Target:  5'- gGCGgcg-CUGGCGGCGCCGaccGCCGCGg -3'
miRNA:   3'- gCGCagaaGGCCGCUGUGGU---CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 64436 0.75 0.264874
Target:  5'- gCGCGUCguagUCGGCGGCcacgGCCAGCCcCGg -3'
miRNA:   3'- -GCGCAGaa--GGCCGCUG----UGGUCGGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.