miRNA display CGI


Results 1 - 20 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 5' -60.1 NC_001847.1 + 124435 0.66 0.752875
Target:  5'- gGCGgcgCU--UGGcCGGCGCgGGCCGCGc -3'
miRNA:   3'- gCGCa--GAagGCC-GCUGUGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 1477 0.66 0.743489
Target:  5'- cCGCGgcagagCCgcagcGGCGGCGCCucgggguagAGCCGCGc -3'
miRNA:   3'- -GCGCagaa--GG-----CCGCUGUGG---------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 128122 0.66 0.743489
Target:  5'- gGCG-CUggcgCUGGCgGAUGCgCGGCCGCu -3'
miRNA:   3'- gCGCaGAa---GGCCG-CUGUG-GUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 81825 0.66 0.743489
Target:  5'- gGCGUggUCCaGGCGAgGuCCAGCgCGUa -3'
miRNA:   3'- gCGCAgaAGG-CCGCUgU-GGUCG-GCGc -5'
6445 5' -60.1 NC_001847.1 + 67176 0.66 0.743489
Target:  5'- cCGC-UCUcggCGGCGACccCCuGCCGCGg -3'
miRNA:   3'- -GCGcAGAag-GCCGCUGu-GGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 28322 0.66 0.743489
Target:  5'- gGCGggcgCCGGgccCGGCGCCccgcggGGCCGCGc -3'
miRNA:   3'- gCGCagaaGGCC---GCUGUGG------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 129455 0.66 0.743489
Target:  5'- aGCGgcuaCUugagCUGGCGGcCGCC-GCCGCGc -3'
miRNA:   3'- gCGCa---GAa---GGCCGCU-GUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 87442 0.66 0.743489
Target:  5'- gGCGUUc-CCGGCGGcCGCCAacGCCGa- -3'
miRNA:   3'- gCGCAGaaGGCCGCU-GUGGU--CGGCgc -5'
6445 5' -60.1 NC_001847.1 + 81310 0.66 0.743489
Target:  5'- aGCGcCgccgCUGcCGcCGCCAGCCGCGc -3'
miRNA:   3'- gCGCaGaa--GGCcGCuGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 122893 0.66 0.744432
Target:  5'- uGCGUCUguguccauagcaucgCCGGCgccGugAUUggGGCCGCGg -3'
miRNA:   3'- gCGCAGAa--------------GGCCG---CugUGG--UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 100193 0.66 0.747255
Target:  5'- aCGCGUCccaccacgcgaugCCGcGCagcuGCGCCAGCgGCGg -3'
miRNA:   3'- -GCGCAGaa-----------GGC-CGc---UGUGGUCGgCGC- -5'
6445 5' -60.1 NC_001847.1 + 91577 0.66 0.75194
Target:  5'- gCGCGUCgccCgCGGCGAagcgcgcaaACCgcggcgccguguuGGCCGCGa -3'
miRNA:   3'- -GCGCAGaa-G-GCCGCUg--------UGG-------------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 21622 0.66 0.752875
Target:  5'- gGCGgcgCU--UGGcCGGCGCgGGCCGCGc -3'
miRNA:   3'- gCGCa--GAagGCC-GCUGUGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 107615 0.66 0.752875
Target:  5'- cCGcCGUUcUCgGGCGucccCGCCGccGCCGCGg -3'
miRNA:   3'- -GC-GCAGaAGgCCGCu---GUGGU--CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 97325 0.66 0.752875
Target:  5'- gCGCGUCggcgUCGcGCccGC-CCGGCCGCGu -3'
miRNA:   3'- -GCGCAGaa--GGC-CGc-UGuGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 82507 0.66 0.752875
Target:  5'- uCGCGUCUggCgCGGCGcucgcgcacGCGCCGaagucaaaggcGCCGCc -3'
miRNA:   3'- -GCGCAGAa-G-GCCGC---------UGUGGU-----------CGGCGc -5'
6445 5' -60.1 NC_001847.1 + 65085 0.66 0.752875
Target:  5'- aGCG-CUU-CGGCGGCGaucgagaaGGCCGCGc -3'
miRNA:   3'- gCGCaGAAgGCCGCUGUgg------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 26646 0.66 0.752875
Target:  5'- cCGgGUCUg--GGCGGCcCCGGCCGg- -3'
miRNA:   3'- -GCgCAGAaggCCGCUGuGGUCGGCgc -5'
6445 5' -60.1 NC_001847.1 + 113937 0.66 0.752875
Target:  5'- gCGCGg--UCgCGGCGGCgucuccuacgccGCCGGgCGCGu -3'
miRNA:   3'- -GCGCagaAG-GCCGCUG------------UGGUCgGCGC- -5'
6445 5' -60.1 NC_001847.1 + 108431 0.66 0.752875
Target:  5'- gCGCGUUc-CUGGacgugGACGCCgAGCUGCGg -3'
miRNA:   3'- -GCGCAGaaGGCCg----CUGUGG-UCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.