miRNA display CGI


Results 1 - 20 of 536 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 5' -60.1 NC_001847.1 + 46192 0.8 0.134436
Target:  5'- aCGCGguagCggCCGGCGGCggccgccgccggGCCGGCCGCGg -3'
miRNA:   3'- -GCGCa---GaaGGCCGCUG------------UGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 38656 0.74 0.310509
Target:  5'- cCGCGUUgccgUGGCGACGCCcGCCGCc -3'
miRNA:   3'- -GCGCAGaag-GCCGCUGUGGuCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 73709 0.73 0.324602
Target:  5'- cCGCGc---CCGGCGGCG-CGGCCGCGg -3'
miRNA:   3'- -GCGCagaaGGCCGCUGUgGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 124435 0.66 0.752875
Target:  5'- gGCGgcgCU--UGGcCGGCGCgGGCCGCGc -3'
miRNA:   3'- gCGCa--GAagGCC-GCUGUGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 79203 0.77 0.209301
Target:  5'- uGCGcauUCUgggCUcGCGACGCCGGCCGCGg -3'
miRNA:   3'- gCGC---AGAa--GGcCGCUGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 85240 0.76 0.235717
Target:  5'- gGCGg---CCGGCGGCGCCAGgUGCGc -3'
miRNA:   3'- gCGCagaaGGCCGCUGUGGUCgGCGC- -5'
6445 5' -60.1 NC_001847.1 + 55504 0.75 0.247044
Target:  5'- aCGUGggccCUgcugCUGGCGGCGCCcGCCGCGg -3'
miRNA:   3'- -GCGCa---GAa---GGCCGCUGUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 53859 0.75 0.258818
Target:  5'- gGCGgcg-CUGGCGGCGCCGaccGCCGCGg -3'
miRNA:   3'- gCGCagaaGGCCGCUGUGGU---CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 103913 0.75 0.271045
Target:  5'- cCGCGgccgCgGGCGGCGCC-GCCGCGg -3'
miRNA:   3'- -GCGCagaaGgCCGCUGUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 116443 0.74 0.303639
Target:  5'- cCGCGgcgCUggCGGUGACGCgGGCCGUGc -3'
miRNA:   3'- -GCGCa--GAagGCCGCUGUGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 84617 0.74 0.283734
Target:  5'- uGCGUCgccUUCGaGCGGgGCCAuGCCGCGg -3'
miRNA:   3'- gCGCAGa--AGGC-CGCUgUGGU-CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 6337 0.75 0.271045
Target:  5'- aCGCGggugccCCGGCGGCaACCGcGCCGCGg -3'
miRNA:   3'- -GCGCagaa--GGCCGCUG-UGGU-CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 93759 0.77 0.185478
Target:  5'- gCGCGgCUgCCGGCGGCGgcCCGGCCGCc -3'
miRNA:   3'- -GCGCaGAaGGCCGCUGU--GGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 81172 0.74 0.283734
Target:  5'- cCGCGccgCUcggagggcUCgCGGCGGCGCCAGCCgGCGc -3'
miRNA:   3'- -GCGCa--GA--------AG-GCCGCUGUGGUCGG-CGC- -5'
6445 5' -60.1 NC_001847.1 + 5393 0.77 0.194707
Target:  5'- aGCGg---CCGGCGGCACaGGCCGCGc -3'
miRNA:   3'- gCGCagaaGGCCGCUGUGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 56853 0.75 0.264874
Target:  5'- gCGcCGUCUgcgcCCGGCGGC-CCGGgCGCGg -3'
miRNA:   3'- -GC-GCAGAa---GGCCGCUGuGGUCgGCGC- -5'
6445 5' -60.1 NC_001847.1 + 17067 0.74 0.296887
Target:  5'- gGCGguaaaCggCCGGCG-UGCCAGCCGCGu -3'
miRNA:   3'- gCGCa----GaaGGCCGCuGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 55449 0.73 0.324602
Target:  5'- aGCGcCUggcgCCGGCGgggcgcgcgccGCGCUAGCCGCu -3'
miRNA:   3'- gCGCaGAa---GGCCGC-----------UGUGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 41306 0.77 0.19947
Target:  5'- gCGCGacgUUUCCGGCGcCGCCGGCCGg- -3'
miRNA:   3'- -GCGCa--GAAGGCCGCuGUGGUCGGCgc -5'
6445 5' -60.1 NC_001847.1 + 9724 0.76 0.241325
Target:  5'- gCGgGUCcUCCGGCGGCGCCGgggcagucGCCGuCGg -3'
miRNA:   3'- -GCgCAGaAGGCCGCUGUGGU--------CGGC-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.