miRNA display CGI


Results 21 - 40 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 5' -60.1 NC_001847.1 + 37555 0.73 0.331824
Target:  5'- gGCGgccCUUCggaagacgCGGCGGCGCUGGCCGCu -3'
miRNA:   3'- gCGCa--GAAG--------GCCGCUGUGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 73709 0.73 0.324602
Target:  5'- cCGCGc---CCGGCGGCG-CGGCCGCGg -3'
miRNA:   3'- -GCGCagaaGGCCGCUGUgGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 6337 0.75 0.271045
Target:  5'- aCGCGggugccCCGGCGGCaACCGcGCCGCGg -3'
miRNA:   3'- -GCGCagaa--GGCCGCUG-UGGU-CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 41306 0.77 0.19947
Target:  5'- gCGCGacgUUUCCGGCGcCGCCGGCCGg- -3'
miRNA:   3'- -GCGCa--GAAGGCCGCuGUGGUCGGCgc -5'
6445 5' -60.1 NC_001847.1 + 85896 0.72 0.393789
Target:  5'- gCGCGUUcgCCGGCGcCACCccGCCGUu -3'
miRNA:   3'- -GCGCAGaaGGCCGCuGUGGu-CGGCGc -5'
6445 5' -60.1 NC_001847.1 + 14290 0.73 0.354196
Target:  5'- cCGCGgcgaaaUGGCGugGCCGGCCGCc -3'
miRNA:   3'- -GCGCagaag-GCCGCugUGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 38656 0.74 0.310509
Target:  5'- cCGCGUUgccgUGGCGACGCCcGCCGCc -3'
miRNA:   3'- -GCGCAGaag-GCCGCUGUGGuCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 5393 0.77 0.194707
Target:  5'- aGCGg---CCGGCGGCACaGGCCGCGc -3'
miRNA:   3'- gCGCagaaGGCCGCUGUGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 2019 0.73 0.354196
Target:  5'- cCGCagGUUUUCCaGCacGGCGCCGGCCGUGg -3'
miRNA:   3'- -GCG--CAGAAGGcCG--CUGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 93759 0.77 0.185478
Target:  5'- gCGCGgCUgCCGGCGGCGgcCCGGCCGCc -3'
miRNA:   3'- -GCGCaGAaGGCCGCUGU--GGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 55449 0.73 0.324602
Target:  5'- aGCGcCUggcgCCGGCGgggcgcgcgccGCGCUAGCCGCu -3'
miRNA:   3'- gCGCaGAa---GGCCGC-----------UGUGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 120595 0.73 0.346622
Target:  5'- gCGCGUCggcaucuaCGGCGGCACCGcgggcagcgagcGCCGCc -3'
miRNA:   3'- -GCGCAGaag-----GCCGCUGUGGU------------CGGCGc -5'
6445 5' -60.1 NC_001847.1 + 81172 0.74 0.283734
Target:  5'- cCGCGccgCUcggagggcUCgCGGCGGCGCCAGCCgGCGc -3'
miRNA:   3'- -GCGCa--GA--------AG-GCCGCUGUGGUCGG-CGC- -5'
6445 5' -60.1 NC_001847.1 + 103913 0.75 0.271045
Target:  5'- cCGCGgccgCgGGCGGCGCC-GCCGCGg -3'
miRNA:   3'- -GCGCagaaGgCCGCUGUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 55504 0.75 0.247044
Target:  5'- aCGUGggccCUgcugCUGGCGGCGCCcGCCGCGg -3'
miRNA:   3'- -GCGCa---GAa---GGCCGCUGUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 79203 0.77 0.209301
Target:  5'- uGCGcauUCUgggCUcGCGACGCCGGCCGCGg -3'
miRNA:   3'- gCGC---AGAa--GGcCGCUGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 19282 0.71 0.41803
Target:  5'- aGCGUCUgugCGGCGGgcCGCCaacaaacgagcgcGGCCGCGg -3'
miRNA:   3'- gCGCAGAag-GCCGCU--GUGG-------------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 106491 0.72 0.393789
Target:  5'- cCGCGUCccccaucUCCGGC-ACGaacaCGGCCGCGg -3'
miRNA:   3'- -GCGCAGa------AGGCCGcUGUg---GUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 7842 0.72 0.369691
Target:  5'- cCGUGUCUccggcaccgCCGGUGGCGCCugcagaggcGGCCGCc -3'
miRNA:   3'- -GCGCAGAa--------GGCCGCUGUGG---------UCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 34969 0.73 0.361111
Target:  5'- aCGCGUUUUCCcuGGCGGCccccgcgcugucgGCCcucuucccGGCCGCGg -3'
miRNA:   3'- -GCGCAGAAGG--CCGCUG-------------UGG--------UCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.