miRNA display CGI


Results 1 - 20 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 5' -60.1 NC_001847.1 + 438 0.68 0.616145
Target:  5'- gGCGgCgg-CGGCGGCAgCAGCgGCGg -3'
miRNA:   3'- gCGCaGaagGCCGCUGUgGUCGgCGC- -5'
6445 5' -60.1 NC_001847.1 + 468 0.68 0.616145
Target:  5'- gGCGgCgg-CGGCGGCAgCAGCgGCGg -3'
miRNA:   3'- gCGCaGaagGCCGCUGUgGUCGgCGC- -5'
6445 5' -60.1 NC_001847.1 + 575 0.69 0.537595
Target:  5'- cCGCGUC-UCCGGCGcCggguccugGCCcuCCGCGg -3'
miRNA:   3'- -GCGCAGaAGGCCGCuG--------UGGucGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 773 0.71 0.444921
Target:  5'- cCGCcg---CCGGCGGCGCCGGCCuCGu -3'
miRNA:   3'- -GCGcagaaGGCCGCUGUGGUCGGcGC- -5'
6445 5' -60.1 NC_001847.1 + 890 0.69 0.556987
Target:  5'- cCGCGcCggggCCGccGCGGcCGCCGGCCGCc -3'
miRNA:   3'- -GCGCaGaa--GGC--CGCU-GUGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 983 0.71 0.444921
Target:  5'- gGCGgggCUUCCGccGCGGCGgCGGCaCGCGc -3'
miRNA:   3'- gCGCa--GAAGGC--CGCUGUgGUCG-GCGC- -5'
6445 5' -60.1 NC_001847.1 + 1100 0.75 0.271045
Target:  5'- cCGCGgccgCgGGCGGCGCC-GCCGCGg -3'
miRNA:   3'- -GCGCagaaGgCCGCUGUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 1155 0.69 0.547264
Target:  5'- gCGCGgc-UCCGGCaGCG-CGGCCGCGc -3'
miRNA:   3'- -GCGCagaAGGCCGcUGUgGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 1477 0.66 0.743489
Target:  5'- cCGCGgcagagCCgcagcGGCGGCGCCucgggguagAGCCGCGc -3'
miRNA:   3'- -GCGCagaa--GG-----CCGCUGUGG---------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 2019 0.73 0.354196
Target:  5'- cCGCagGUUUUCCaGCacGGCGCCGGCCGUGg -3'
miRNA:   3'- -GCG--CAGAAGGcCG--CUGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 2092 0.69 0.576574
Target:  5'- cCGCGgggcCCGcGCGGCgGCgGGCCGCGa -3'
miRNA:   3'- -GCGCagaaGGC-CGCUG-UGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 2248 0.66 0.705114
Target:  5'- aGCGUCUcCCaGGUGACG-CGGCgGCc -3'
miRNA:   3'- gCGCAGAaGG-CCGCUGUgGUCGgCGc -5'
6445 5' -60.1 NC_001847.1 + 2297 0.66 0.743489
Target:  5'- gGCGgggCcgCCgGGCGGCAugggccCCAGCaCGCGg -3'
miRNA:   3'- gCGCa--GaaGG-CCGCUGU------GGUCG-GCGC- -5'
6445 5' -60.1 NC_001847.1 + 2340 0.66 0.724451
Target:  5'- aGCGgcggCUcccgCCGcGcCGGC-CCGGCCGCGu -3'
miRNA:   3'- gCGCa---GAa---GGC-C-GCUGuGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 2422 0.67 0.665806
Target:  5'- uGCGcCgcUUCGGCcaagcuucGCGCCAGCCGCa -3'
miRNA:   3'- gCGCaGa-AGGCCGc-------UGUGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 2471 0.66 0.752875
Target:  5'- aGCGgg---CGGCGGCGCCcccGCCGCc -3'
miRNA:   3'- gCGCagaagGCCGCUGUGGu--CGGCGc -5'
6445 5' -60.1 NC_001847.1 + 2563 0.66 0.714816
Target:  5'- gGCuGUCUUCgGcGCgGGCGCCugcgcggccGCCGCGg -3'
miRNA:   3'- gCG-CAGAAGgC-CG-CUGUGGu--------CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 2658 0.67 0.675691
Target:  5'- gGCGcCUUcgcCCGGCGGC-UCGGCCgGCa -3'
miRNA:   3'- gCGCaGAA---GGCCGCUGuGGUCGG-CGc -5'
6445 5' -60.1 NC_001847.1 + 2777 0.7 0.518442
Target:  5'- gGCGcCcccgCCGGCGGCcuCCagGGCCGCGa -3'
miRNA:   3'- gCGCaGaa--GGCCGCUGu-GG--UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 2979 0.66 0.734012
Target:  5'- aGCG-CcgCCGGggcCGGCGCUggAGCCGCGc -3'
miRNA:   3'- gCGCaGaaGGCC---GCUGUGG--UCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.