miRNA display CGI


Results 1 - 20 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 5' -60.1 NC_001847.1 + 134764 0.67 0.685543
Target:  5'- gCGCGg--UCCGGCG-CGC-GGCgCGCGg -3'
miRNA:   3'- -GCGCagaAGGCCGCuGUGgUCG-GCGC- -5'
6445 5' -60.1 NC_001847.1 + 134365 0.69 0.547264
Target:  5'- aCGaCGaCgaggCCGGCGcCGCCGGCgGCGg -3'
miRNA:   3'- -GC-GCaGaa--GGCCGCuGUGGUCGgCGC- -5'
6445 5' -60.1 NC_001847.1 + 134234 0.69 0.537595
Target:  5'- gGCGcCggCgGGCGGCgGCCggcGGCCGCGg -3'
miRNA:   3'- gCGCaGaaGgCCGCUG-UGG---UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 134153 0.67 0.665806
Target:  5'- gCGCGUgcCgccgCCGGCGGCggaagccccGCCGGCC-CGg -3'
miRNA:   3'- -GCGCA--Gaa--GGCCGCUG---------UGGUCGGcGC- -5'
6445 5' -60.1 NC_001847.1 + 134030 0.67 0.695353
Target:  5'- gGUG-CUggaggCCgcGGCGGCGCCgcccgcGGCCGCGg -3'
miRNA:   3'- gCGCaGAa----GG--CCGCUGUGG------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 133936 0.7 0.490242
Target:  5'- gCGCG-CUggagCUGGCGcccgacgaGCuGCCGGCCGCGg -3'
miRNA:   3'- -GCGCaGAa---GGCCGC--------UG-UGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 133769 0.66 0.724451
Target:  5'- gCGCGUgCUgCCGGCGcucgacggGCGCaaggacauGGCCGCGc -3'
miRNA:   3'- -GCGCA-GAaGGCCGC--------UGUGg-------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 133602 0.7 0.515592
Target:  5'- gCGCGUCUU-CGGCccgGGCGCCuucgcgcgcgccgaGGCCGCc -3'
miRNA:   3'- -GCGCAGAAgGCCG---CUGUGG--------------UCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 133188 0.67 0.694374
Target:  5'- gGCGcCgcCCGGCGaggacgaGCGCCGGCgGCc -3'
miRNA:   3'- gCGCaGaaGGCCGC-------UGUGGUCGgCGc -5'
6445 5' -60.1 NC_001847.1 + 132899 0.68 0.59631
Target:  5'- cCGCGUCacCUGGgaGACGCUcauguuccacGGCCGCGa -3'
miRNA:   3'- -GCGCAGaaGGCCg-CUGUGG----------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 132834 0.67 0.669763
Target:  5'- cCGCGUgCUggggcccaugccgcCCGGCGGC-CCcGCCGCc -3'
miRNA:   3'- -GCGCA-GAa-------------GGCCGCUGuGGuCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 132704 0.66 0.743489
Target:  5'- gGCGagg--CGGCGGCccuGCCGGCCGCc -3'
miRNA:   3'- gCGCagaagGCCGCUG---UGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 132658 0.68 0.626083
Target:  5'- gCGaCGUCUUCacacggcggCGGgGGCGCC-GCCGCc -3'
miRNA:   3'- -GC-GCAGAAG---------GCCgCUGUGGuCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 132380 0.69 0.547264
Target:  5'- gGCGggggcgCCGGCGccgGCGCC-GCCGCGc -3'
miRNA:   3'- gCGCagaa--GGCCGC---UGUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 132285 0.66 0.743489
Target:  5'- gCGCGUCggCCuG-GGCGCUGGCgCGCGc -3'
miRNA:   3'- -GCGCAGaaGGcCgCUGUGGUCG-GCGC- -5'
6445 5' -60.1 NC_001847.1 + 132171 0.7 0.490242
Target:  5'- gCGCGgcc-CCGGCGGCGCUgcgcgccgaggcGGCCGCc -3'
miRNA:   3'- -GCGCagaaGGCCGCUGUGG------------UCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 132039 0.7 0.471844
Target:  5'- cCGCGgCgggCC-GCGGCcuGCCGGCCGCGg -3'
miRNA:   3'- -GCGCaGaa-GGcCGCUG--UGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 131667 0.69 0.576574
Target:  5'- uGCGagCUcUCGGCG-CGCCGGCgCGCGc -3'
miRNA:   3'- gCGCa-GAaGGCCGCuGUGGUCG-GCGC- -5'
6445 5' -60.1 NC_001847.1 + 131657 0.69 0.576574
Target:  5'- gGCGccgCUgccgCCGGUcgggGACGCCAugGCCGCGc -3'
miRNA:   3'- gCGCa--GAa---GGCCG----CUGUGGU--CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 131423 0.67 0.645965
Target:  5'- gCGCGcCguggCCGGCGcGCGCgAuuGCCGCGc -3'
miRNA:   3'- -GCGCaGaa--GGCCGC-UGUGgU--CGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.