miRNA display CGI


Results 21 - 40 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 5' -60.1 NC_001847.1 + 91577 0.66 0.75194
Target:  5'- gCGCGUCgccCgCGGCGAagcgcgcaaACCgcggcgccguguuGGCCGCGa -3'
miRNA:   3'- -GCGCAGaa-G-GCCGCUg--------UGG-------------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 100193 0.66 0.747255
Target:  5'- aCGCGUCccaccacgcgaugCCGcGCagcuGCGCCAGCgGCGg -3'
miRNA:   3'- -GCGCAGaa-----------GGC-CGc---UGUGGUCGgCGC- -5'
6445 5' -60.1 NC_001847.1 + 122893 0.66 0.744432
Target:  5'- uGCGUCUguguccauagcaucgCCGGCgccGugAUUggGGCCGCGg -3'
miRNA:   3'- gCGCAGAa--------------GGCCG---CugUGG--UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 67139 0.66 0.743489
Target:  5'- -cUGUCcgaCGGCGGCguaauACCGGCCGCc -3'
miRNA:   3'- gcGCAGaagGCCGCUG-----UGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 63750 0.66 0.743489
Target:  5'- aGCGcCgcCUGGCGGCGCgGGCCa-- -3'
miRNA:   3'- gCGCaGaaGGCCGCUGUGgUCGGcgc -5'
6445 5' -60.1 NC_001847.1 + 76472 0.66 0.743489
Target:  5'- aCGCG-CUUCCacggcaGCGGCGCCuGCaGCGc -3'
miRNA:   3'- -GCGCaGAAGGc-----CGCUGUGGuCGgCGC- -5'
6445 5' -60.1 NC_001847.1 + 105110 0.66 0.743489
Target:  5'- gGCGgggCcgCCgGGCGGCAugggccCCAGCaCGCGg -3'
miRNA:   3'- gCGCa--GaaGG-CCGCUGU------GGUCG-GCGC- -5'
6445 5' -60.1 NC_001847.1 + 103778 0.66 0.743489
Target:  5'- uGCGcCggcacccggCCGGCGGggcuuccgcCGCCGGCgGCGg -3'
miRNA:   3'- gCGCaGaa-------GGCCGCU---------GUGGUCGgCGC- -5'
6445 5' -60.1 NC_001847.1 + 104290 0.66 0.743489
Target:  5'- cCGCGgcagagCCgcagcGGCGGCGCCucgggguagAGCCGCGc -3'
miRNA:   3'- -GCGCagaa--GG-----CCGCUGUGG---------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 131135 0.66 0.743489
Target:  5'- gGCGggcgCCGGgccCGGCGCCccgcggGGCCGCGc -3'
miRNA:   3'- gCGCagaaGGCC---GCUGUGG------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 1477 0.66 0.743489
Target:  5'- cCGCGgcagagCCgcagcGGCGGCGCCucgggguagAGCCGCGc -3'
miRNA:   3'- -GCGCagaa--GG-----CCGCUGUGG---------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 128122 0.66 0.743489
Target:  5'- gGCG-CUggcgCUGGCgGAUGCgCGGCCGCu -3'
miRNA:   3'- gCGCaGAa---GGCCG-CUGUG-GUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 81825 0.66 0.743489
Target:  5'- gGCGUggUCCaGGCGAgGuCCAGCgCGUa -3'
miRNA:   3'- gCGCAgaAGG-CCGCUgU-GGUCG-GCGc -5'
6445 5' -60.1 NC_001847.1 + 87442 0.66 0.743489
Target:  5'- gGCGUUc-CCGGCGGcCGCCAacGCCGa- -3'
miRNA:   3'- gCGCAGaaGGCCGCU-GUGGU--CGGCgc -5'
6445 5' -60.1 NC_001847.1 + 81310 0.66 0.743489
Target:  5'- aGCGcCgccgCUGcCGcCGCCAGCCGCGc -3'
miRNA:   3'- gCGCaGaa--GGCcGCuGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 29891 0.66 0.743489
Target:  5'- gGCGagg--CGGCGGCccuGCCGGCCGCc -3'
miRNA:   3'- gCGCagaagGCCGCUG---UGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 29472 0.66 0.743489
Target:  5'- gCGCGUCggCCuG-GGCGCUGGCgCGCGc -3'
miRNA:   3'- -GCGCAGaaGGcCgCUGUGGUCG-GCGC- -5'
6445 5' -60.1 NC_001847.1 + 12667 0.66 0.743489
Target:  5'- aGCGgua--CGGCGACGCgaAGCUGCa -3'
miRNA:   3'- gCGCagaagGCCGCUGUGg-UCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 2297 0.66 0.743489
Target:  5'- gGCGgggCcgCCgGGCGGCAugggccCCAGCaCGCGg -3'
miRNA:   3'- gCGCa--GaaGG-CCGCUGU------GGUCG-GCGC- -5'
6445 5' -60.1 NC_001847.1 + 42095 0.66 0.743489
Target:  5'- uCGCGgug-CCGGCaccguccaGGCGCCgggGGCCGCu -3'
miRNA:   3'- -GCGCagaaGGCCG--------CUGUGG---UCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.