miRNA display CGI


Results 41 - 60 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 5' -60.1 NC_001847.1 + 28322 0.66 0.743489
Target:  5'- gGCGggcgCCGGgccCGGCGCCccgcggGGCCGCGc -3'
miRNA:   3'- gCGCagaaGGCC---GCUGUGG------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 67176 0.66 0.743489
Target:  5'- cCGC-UCUcggCGGCGACccCCuGCCGCGg -3'
miRNA:   3'- -GCGcAGAag-GCCGCUGu-GGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 81825 0.66 0.743489
Target:  5'- gGCGUggUCCaGGCGAgGuCCAGCgCGUa -3'
miRNA:   3'- gCGCAgaAGG-CCGCUgU-GGUCG-GCGc -5'
6445 5' -60.1 NC_001847.1 + 128122 0.66 0.743489
Target:  5'- gGCG-CUggcgCUGGCgGAUGCgCGGCCGCu -3'
miRNA:   3'- gCGCaGAa---GGCCG-CUGUG-GUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 1477 0.66 0.743489
Target:  5'- cCGCGgcagagCCgcagcGGCGGCGCCucgggguagAGCCGCGc -3'
miRNA:   3'- -GCGCagaa--GG-----CCGCUGUGG---------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 29891 0.66 0.743489
Target:  5'- gGCGagg--CGGCGGCccuGCCGGCCGCc -3'
miRNA:   3'- gCGCagaagGCCGCUG---UGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 29472 0.66 0.743489
Target:  5'- gCGCGUCggCCuG-GGCGCUGGCgCGCGc -3'
miRNA:   3'- -GCGCAGaaGGcCgCUGUGGUCG-GCGC- -5'
6445 5' -60.1 NC_001847.1 + 2297 0.66 0.743489
Target:  5'- gGCGgggCcgCCgGGCGGCAugggccCCAGCaCGCGg -3'
miRNA:   3'- gCGCa--GaaGG-CCGCUGU------GGUCG-GCGC- -5'
6445 5' -60.1 NC_001847.1 + 90469 0.66 0.743489
Target:  5'- cCGUGUugCUUCCGGacauCGCCuGUCGCGc -3'
miRNA:   3'- -GCGCA--GAAGGCCgcu-GUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 132704 0.66 0.743489
Target:  5'- gGCGagg--CGGCGGCccuGCCGGCCGCc -3'
miRNA:   3'- gCGCagaagGCCGCUG---UGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 104364 0.66 0.742546
Target:  5'- gGCGUCcgcgcCCGcagacgcGCGGCGCUgcagcgGGCCGCGg -3'
miRNA:   3'- gCGCAGaa---GGC-------CGCUGUGG------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 60679 0.66 0.741601
Target:  5'- uCGCGgcacagcacgUCCGGCGuCACCugguAGCgGCGc -3'
miRNA:   3'- -GCGCaga-------AGGCCGCuGUGG----UCGgCGC- -5'
6445 5' -60.1 NC_001847.1 + 106205 0.66 0.740656
Target:  5'- aGCGUCUccacggcuuggUCUGGCGuggcgcucgccuGCACggcgucccaaacggCGGCCGCGu -3'
miRNA:   3'- gCGCAGA-----------AGGCCGC------------UGUG--------------GUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 97247 0.66 0.740656
Target:  5'- aCGCGUUUUCgauaauguucucguCGaGCGcCAgCAGCCGCu -3'
miRNA:   3'- -GCGCAGAAG--------------GC-CGCuGUgGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 21801 0.66 0.737813
Target:  5'- uCGCGaCgUUCGuGCGcugccacaccgacuuGCACCAGCCGCc -3'
miRNA:   3'- -GCGCaGaAGGC-CGC---------------UGUGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 89563 0.66 0.737813
Target:  5'- -uCGUCgcgcCCGGCGAgggcguggagcgcgaCGCC-GCCGCGg -3'
miRNA:   3'- gcGCAGaa--GGCCGCU---------------GUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 36036 0.66 0.734964
Target:  5'- gCGCGgacgagcacuaCGcGCGGCuGCCGGCCGCGu -3'
miRNA:   3'- -GCGCagaag------GC-CGCUG-UGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 69340 0.66 0.734012
Target:  5'- gGCG-CUgCUGGCGGCGCUggugcuGGCgCGCGc -3'
miRNA:   3'- gCGCaGAaGGCCGCUGUGG------UCG-GCGC- -5'
6445 5' -60.1 NC_001847.1 + 47860 0.66 0.734012
Target:  5'- uCGCGUgCUgcgCgGGCG-CGCgCAGCgCGCGc -3'
miRNA:   3'- -GCGCA-GAa--GgCCGCuGUG-GUCG-GCGC- -5'
6445 5' -60.1 NC_001847.1 + 84770 0.66 0.734012
Target:  5'- gGCcaCggCCagcagGGCGACGCCGGCCaGCGc -3'
miRNA:   3'- gCGcaGaaGG-----CCGCUGUGGUCGG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.