miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6447 3' -56.3 NC_001847.1 + 39163 0.68 0.749443
Target:  5'- --gCCGgCCGCgcagccGCgg-CAGCGGCUGc -3'
miRNA:   3'- uuaGGCgGGCGa-----UGaaaGUCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 65810 0.68 0.739511
Target:  5'- -cUCCGCuaGCUGCg--CGGCuGCUGg -3'
miRNA:   3'- uuAGGCGggCGAUGaaaGUCGcCGAC- -5'
6447 3' -56.3 NC_001847.1 + 115811 0.7 0.625931
Target:  5'- -cUCCGCgCGCUGCg--CuGCGGCg- -3'
miRNA:   3'- uuAGGCGgGCGAUGaaaGuCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 64399 0.72 0.522675
Target:  5'- --cCCGCUcugcgcggCGCUAUUggCAGCGGCUGu -3'
miRNA:   3'- uuaGGCGG--------GCGAUGAaaGUCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 91658 0.66 0.824188
Target:  5'- -cUUCGCCCucucucgcgGCUGCgg-CuGCGGCUGc -3'
miRNA:   3'- uuAGGCGGG---------CGAUGaaaGuCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 133422 0.67 0.78799
Target:  5'- --gCUGgCCGCgGCgcggCGGCGGCUGa -3'
miRNA:   3'- uuaGGCgGGCGaUGaaa-GUCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 81171 0.68 0.729482
Target:  5'- --gCCGCgCCGCUcggaggGCUcgCGGCGGCg- -3'
miRNA:   3'- uuaGGCG-GGCGA------UGAaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 76940 0.72 0.512657
Target:  5'- aGAUCCGCCCGgagcgcCUGCUggccgaaGGCGGCUu -3'
miRNA:   3'- -UUAGGCGGGC------GAUGAaag----UCGCCGAc -5'
6447 3' -56.3 NC_001847.1 + 86507 0.67 0.77855
Target:  5'- --gCUGCaCCGUcGCg--CGGCGGCUGg -3'
miRNA:   3'- uuaGGCG-GGCGaUGaaaGUCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 87475 0.72 0.492865
Target:  5'- ---gCGCCCGCUucguaaACUUggccgugcUCGGCGGCUGc -3'
miRNA:   3'- uuagGCGGGCGA------UGAA--------AGUCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 116425 0.68 0.729482
Target:  5'- --aCCGCCCGCUggcGCUccCcGCGGCg- -3'
miRNA:   3'- uuaGGCGGGCGA---UGAaaGuCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 58653 0.68 0.749443
Target:  5'- -uUCCGCCggguCGCacGCUUgCGGCGGUUGg -3'
miRNA:   3'- uuAGGCGG----GCGa-UGAAaGUCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 116154 0.68 0.719364
Target:  5'- --gCCGCCCGUgcgcuaaACUUUCgcauuauccGGCGGUUGa -3'
miRNA:   3'- uuaGGCGGGCGa------UGAAAG---------UCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 34144 0.69 0.657351
Target:  5'- --gCCGCCgcggcgagcgCGCUGCgcgaGGCGGCUGa -3'
miRNA:   3'- uuaGGCGG----------GCGAUGaaagUCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 131427 0.71 0.573768
Target:  5'- --gCCGCgCGCUACg--CGGCGGCc- -3'
miRNA:   3'- uuaGGCGgGCGAUGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 53991 0.71 0.539874
Target:  5'- -uUCCGCCCGgcgccgcguuggcuCUACgcggUCAGCGaGCUGc -3'
miRNA:   3'- uuAGGCGGGC--------------GAUGaa--AGUCGC-CGAC- -5'
6447 3' -56.3 NC_001847.1 + 11568 0.66 0.832801
Target:  5'- cGGUCCGgcCCCGCU-Cg--CGGCGGCc- -3'
miRNA:   3'- -UUAGGC--GGGCGAuGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 43066 0.66 0.824188
Target:  5'- cAAUCgGCaacgcgggCGCUGCUggcUCGGCGGCg- -3'
miRNA:   3'- -UUAGgCGg-------GCGAUGAa--AGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 108764 0.67 0.80642
Target:  5'- --cCCGCCCGCUGCUUcUAGCu---- -3'
miRNA:   3'- uuaGGCGGGCGAUGAAaGUCGccgac -5'
6447 3' -56.3 NC_001847.1 + 103415 0.67 0.78799
Target:  5'- -cUCCGCggCCGCUcCg--CAGCGGCg- -3'
miRNA:   3'- uuAGGCG--GGCGAuGaaaGUCGCCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.