miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6447 3' -56.3 NC_001847.1 + 28361 0.73 0.463861
Target:  5'- cAUCCGCCCGCUGCUgcagAGCcGCUu -3'
miRNA:   3'- uUAGGCGGGCGAUGAaag-UCGcCGAc -5'
6447 3' -56.3 NC_001847.1 + 81171 0.68 0.729482
Target:  5'- --gCCGCgCCGCUcggaggGCUcgCGGCGGCg- -3'
miRNA:   3'- uuaGGCG-GGCGA------UGAaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 65810 0.68 0.739511
Target:  5'- -cUCCGCuaGCUGCg--CGGCuGCUGg -3'
miRNA:   3'- uuAGGCGggCGAUGaaaGUCGcCGAC- -5'
6447 3' -56.3 NC_001847.1 + 86531 0.66 0.857463
Target:  5'- ---gCGCCCGCgUGCUggCGgcGCGGCUu -3'
miRNA:   3'- uuagGCGGGCG-AUGAaaGU--CGCCGAc -5'
6447 3' -56.3 NC_001847.1 + 53991 0.71 0.539874
Target:  5'- -uUCCGCCCGgcgccgcguuggcuCUACgcggUCAGCGaGCUGc -3'
miRNA:   3'- uuAGGCGGGC--------------GAUGaa--AGUCGC-CGAC- -5'
6447 3' -56.3 NC_001847.1 + 78513 0.71 0.553154
Target:  5'- -cUCgGCCgGCUGCUcgC-GCGGCUGg -3'
miRNA:   3'- uuAGgCGGgCGAUGAaaGuCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 131427 0.71 0.573768
Target:  5'- --gCCGCgCGCUACg--CGGCGGCc- -3'
miRNA:   3'- uuaGGCGgGCGAUGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 106049 0.7 0.594555
Target:  5'- --gCCGCCCGCgccgUGCUcgcCGGCGGCa- -3'
miRNA:   3'- uuaGGCGGGCG----AUGAaa-GUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 34144 0.69 0.657351
Target:  5'- --gCCGCCgcggcgagcgCGCUGCgcgaGGCGGCUGa -3'
miRNA:   3'- uuaGGCGG----------GCGAUGaaagUCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 29473 0.68 0.729482
Target:  5'- --gCCGCCCGCgGCcga-GGCGGCa- -3'
miRNA:   3'- uuaGGCGGGCGaUGaaagUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 81429 0.68 0.709167
Target:  5'- cGAUCCGcCCCGCgaGCcgcCGGCGGCg- -3'
miRNA:   3'- -UUAGGC-GGGCGa-UGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 115811 0.7 0.625931
Target:  5'- -cUCCGCgCGCUGCg--CuGCGGCg- -3'
miRNA:   3'- uuAGGCGgGCGAUGaaaGuCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 87475 0.72 0.492865
Target:  5'- ---gCGCCCGCUucguaaACUUggccgugcUCGGCGGCUGc -3'
miRNA:   3'- uuagGCGGGCGA------UGAA--------AGUCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 116154 0.68 0.719364
Target:  5'- --gCCGCCCGUgcgcuaaACUUUCgcauuauccGGCGGUUGa -3'
miRNA:   3'- uuaGGCGGGCGa------UGAAAG---------UCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 76940 0.72 0.512657
Target:  5'- aGAUCCGCCCGgagcgcCUGCUggccgaaGGCGGCUu -3'
miRNA:   3'- -UUAGGCGGGC------GAUGAaag----UCGCCGAc -5'
6447 3' -56.3 NC_001847.1 + 12093 0.7 0.615457
Target:  5'- gGGUCCggcGCCCGCggccgUACUUcCAGCGGCc- -3'
miRNA:   3'- -UUAGG---CGGGCG-----AUGAAaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 10893 0.68 0.719364
Target:  5'- --aCCGCCUGCggcaGCUggUGGCGGCg- -3'
miRNA:   3'- uuaGGCGGGCGa---UGAaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 116425 0.68 0.729482
Target:  5'- --aCCGCCCGCUggcGCUccCcGCGGCg- -3'
miRNA:   3'- uuaGGCGGGCGA---UGAaaGuCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 64399 0.72 0.522675
Target:  5'- --cCCGCUcugcgcggCGCUAUUggCAGCGGCUGu -3'
miRNA:   3'- uuaGGCGG--------GCGAUGAaaGUCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 13142 0.71 0.563436
Target:  5'- --gCCGCCUGCcGCggcCGGCGGUUGg -3'
miRNA:   3'- uuaGGCGGGCGaUGaaaGUCGCCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.