miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6447 3' -56.3 NC_001847.1 + 602 0.67 0.78799
Target:  5'- -cUCCGCggCCGCUcCg--CAGCGGCg- -3'
miRNA:   3'- uuAGGCG--GGCGAuGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 1232 0.66 0.850258
Target:  5'- --gCCGCCCGCaggccagguacaccgGCcg-CAGCGGCg- -3'
miRNA:   3'- uuaGGCGGGCGa--------------UGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 2363 0.67 0.80642
Target:  5'- --cCCGgCCGCgucgGCgg-CGGCGGCUu -3'
miRNA:   3'- uuaGGCgGGCGa---UGaaaGUCGCCGAc -5'
6447 3' -56.3 NC_001847.1 + 2538 0.67 0.80642
Target:  5'- --gCCGCgggaCCGCUGCUcucCGGCgGGCUGu -3'
miRNA:   3'- uuaGGCG----GGCGAUGAaa-GUCG-CCGAC- -5'
6447 3' -56.3 NC_001847.1 + 3236 0.7 0.594555
Target:  5'- --gCCGCCCGCgccgUGCUcgcCGGCGGCa- -3'
miRNA:   3'- uuaGGCGGGCG----AUGAaa-GUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 5469 0.66 0.857463
Target:  5'- --gCCGCUCuCUGCgg-CGGCGGCa- -3'
miRNA:   3'- uuaGGCGGGcGAUGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 5951 0.66 0.841223
Target:  5'- --cCCGCCCGCUGCUUcUAGCc---- -3'
miRNA:   3'- uuaGGCGGGCGAUGAAaGUCGccgac -5'
6447 3' -56.3 NC_001847.1 + 10893 0.68 0.719364
Target:  5'- --aCCGCCUGCggcaGCUggUGGCGGCg- -3'
miRNA:   3'- uuaGGCGGGCGa---UGAaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 11568 0.66 0.832801
Target:  5'- cGGUCCGgcCCCGCU-Cg--CGGCGGCc- -3'
miRNA:   3'- -UUAGGC--GGGCGAuGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 12093 0.7 0.615457
Target:  5'- gGGUCCggcGCCCGCggccgUACUUcCAGCGGCc- -3'
miRNA:   3'- -UUAGG---CGGGCG-----AUGAAaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 13142 0.71 0.563436
Target:  5'- --gCCGCCUGCcGCggcCGGCGGUUGg -3'
miRNA:   3'- uuaGGCGGGCGaUGaaaGUCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 14143 0.72 0.492865
Target:  5'- -cUCCgGCCgGCUGCg--CAGCGGCg- -3'
miRNA:   3'- uuAGG-CGGgCGAUGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 14653 0.66 0.842055
Target:  5'- --gCCGCUCGCUGCgagcggggcgcgugUCGGCGuGCa- -3'
miRNA:   3'- uuaGGCGGGCGAUGaa------------AGUCGC-CGac -5'
6447 3' -56.3 NC_001847.1 + 27537 0.68 0.759267
Target:  5'- ---aCGCCCGagaacgGCggcgCGGCGGCUGg -3'
miRNA:   3'- uuagGCGGGCga----UGaaa-GUCGCCGAC- -5'
6447 3' -56.3 NC_001847.1 + 28361 0.73 0.463861
Target:  5'- cAUCCGCCCGCUGCUgcagAGCcGCUu -3'
miRNA:   3'- uUAGGCGGGCGAUGAaag-UCGcCGAc -5'
6447 3' -56.3 NC_001847.1 + 28539 0.68 0.739511
Target:  5'- --cCCGgCCGCgUGCgcUUCGGCGGCg- -3'
miRNA:   3'- uuaGGCgGGCG-AUGa-AAGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 28614 0.71 0.573768
Target:  5'- --gCCGCgCGCUACg--CGGCGGCc- -3'
miRNA:   3'- uuaGGCGgGCGAUGaaaGUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 29473 0.68 0.729482
Target:  5'- --gCCGCCCGCgGCcga-GGCGGCa- -3'
miRNA:   3'- uuaGGCGGGCGaUGaaagUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 30016 0.67 0.775691
Target:  5'- --cCCGCCCGCgUGCUggggcccaugccgccCGGCGGCc- -3'
miRNA:   3'- uuaGGCGGGCG-AUGAaa-------------GUCGCCGac -5'
6447 3' -56.3 NC_001847.1 + 30609 0.67 0.78799
Target:  5'- --gCUGgCCGCgGCgcggCGGCGGCUGa -3'
miRNA:   3'- uuaGGCgGGCGaUGaaa-GUCGCCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.