miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 3' -51.7 NC_001847.1 + 69708 0.8 0.385577
Target:  5'- -cGGUCCGCGGCGCGCGGCUg----- -3'
miRNA:   3'- guUCAGGUGCUGCGCGCUGAacuucu -5'
6448 3' -51.7 NC_001847.1 + 53281 0.66 0.981213
Target:  5'- cCGAGUCCgACGaACGCGCG-CUcGAu-- -3'
miRNA:   3'- -GUUCAGG-UGC-UGCGCGCuGAaCUucu -5'
6448 3' -51.7 NC_001847.1 + 56300 0.66 0.98327
Target:  5'- -cAGUCUGCGGCgucGCGCGGCgggcgcgcGAAGGc -3'
miRNA:   3'- guUCAGGUGCUG---CGCGCUGaa------CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 52244 0.66 0.98327
Target:  5'- cCGGGcgCCGCG-CGcCGCGGCUUGGc-- -3'
miRNA:   3'- -GUUCa-GGUGCuGC-GCGCUGAACUucu -5'
6448 3' -51.7 NC_001847.1 + 72582 0.66 0.985152
Target:  5'- cCGAGcaaCCGCGGC-CGCGGCggcaGAAGGg -3'
miRNA:   3'- -GUUCa--GGUGCUGcGCGCUGaa--CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 80957 0.68 0.95748
Target:  5'- --uGUCCGCGAgCGCGCGgucaaaguGCUccGggGAg -3'
miRNA:   3'- guuCAGGUGCU-GCGCGC--------UGAa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 38141 0.68 0.953498
Target:  5'- cCGAGUCUucgcGCGGCGCGCcGCcccGAGGGa -3'
miRNA:   3'- -GUUCAGG----UGCUGCGCGcUGaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 94496 0.76 0.610821
Target:  5'- gAAGgCCGCGAgGCGCGGCggacgUGggGGa -3'
miRNA:   3'- gUUCaGGUGCUgCGCGCUGa----ACuuCU- -5'
6448 3' -51.7 NC_001847.1 + 87748 0.75 0.684677
Target:  5'- --cGUCUACGACGUGCGGCUcGAcGGc -3'
miRNA:   3'- guuCAGGUGCUGCGCGCUGAaCUuCU- -5'
6448 3' -51.7 NC_001847.1 + 62192 0.74 0.726063
Target:  5'- gAGGUCCACGcgcGCGUGCGGCUgcgUGAGc- -3'
miRNA:   3'- gUUCAGGUGC---UGCGCGCUGA---ACUUcu -5'
6448 3' -51.7 NC_001847.1 + 14707 0.71 0.847688
Target:  5'- --cGUUCGCGACGCGCGGgcaGGAGGc -3'
miRNA:   3'- guuCAGGUGCUGCGCGCUgaaCUUCU- -5'
6448 3' -51.7 NC_001847.1 + 27948 0.71 0.855825
Target:  5'- uGGG-CCGCGGCGCGCGcGCUcgcggucgcggUGGAGGc -3'
miRNA:   3'- gUUCaGGUGCUGCGCGC-UGA-----------ACUUCU- -5'
6448 3' -51.7 NC_001847.1 + 48055 0.69 0.924379
Target:  5'- gCGAGUCCGCGcGCGCcGCGAaaggcGggGGc -3'
miRNA:   3'- -GUUCAGGUGC-UGCG-CGCUgaa--CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 54014 0.71 0.871443
Target:  5'- aCAcGUCCGgucCGACGCGCGGCgcgcucUGGAGc -3'
miRNA:   3'- -GUuCAGGU---GCUGCGCGCUGa-----ACUUCu -5'
6448 3' -51.7 NC_001847.1 + 27623 0.69 0.935098
Target:  5'- uCGAGUCCGCggaccucggcccGACGgGgGGCUcgGAGGAa -3'
miRNA:   3'- -GUUCAGGUG------------CUGCgCgCUGAa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 73432 0.69 0.940075
Target:  5'- cCGAGcgCCcucugGCGACGCGCGGCaUGGAc- -3'
miRNA:   3'- -GUUCa-GG-----UGCUGCGCGCUGaACUUcu -5'
6448 3' -51.7 NC_001847.1 + 52907 0.68 0.944799
Target:  5'- cUAGGUCCGCGG-GCaGCGGCUcGggGc -3'
miRNA:   3'- -GUUCAGGUGCUgCG-CGCUGAaCuuCu -5'
6448 3' -51.7 NC_001847.1 + 52774 0.68 0.949273
Target:  5'- gCAGGUCaCGCGGCGCGCG-CUc----- -3'
miRNA:   3'- -GUUCAG-GUGCUGCGCGCuGAacuucu -5'
6448 3' -51.7 NC_001847.1 + 54326 0.68 0.949273
Target:  5'- cCAAGU-CGCGGCGCGCGGCc------ -3'
miRNA:   3'- -GUUCAgGUGCUGCGCGCUGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 98807 0.68 0.953498
Target:  5'- ----gCCGCGGCGCGCGGCacGAGc- -3'
miRNA:   3'- guucaGGUGCUGCGCGCUGaaCUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.