miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 3' -51.7 NC_001847.1 + 61266 0.68 0.961222
Target:  5'- --cGUCCGCGGCGCGCG-Cg------ -3'
miRNA:   3'- guuCAGGUGCUGCGCGCuGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 96991 0.68 0.949273
Target:  5'- -cGGUCCcucgggGCGGCGCGCcGCgcGAAGAc -3'
miRNA:   3'- guUCAGG------UGCUGCGCGcUGaaCUUCU- -5'
6448 3' -51.7 NC_001847.1 + 135140 0.66 0.986868
Target:  5'- gGGGcCCGCG-CgGCGCGGCgcgGAGGG -3'
miRNA:   3'- gUUCaGGUGCuG-CGCGCUGaa-CUUCU -5'
6448 3' -51.7 NC_001847.1 + 35891 0.66 0.978973
Target:  5'- gGAGUCgGCGGCG-GCGGCgUGGGa- -3'
miRNA:   3'- gUUCAGgUGCUGCgCGCUGaACUUcu -5'
6448 3' -51.7 NC_001847.1 + 54043 0.67 0.968009
Target:  5'- --uGUCCucguCGGCGCGCGGC--GAGGc -3'
miRNA:   3'- guuCAGGu---GCUGCGCGCUGaaCUUCu -5'
6448 3' -51.7 NC_001847.1 + 32055 0.68 0.949273
Target:  5'- aAGGUCCGgGGCGCGgaGACggcGggGGc -3'
miRNA:   3'- gUUCAGGUgCUGCGCg-CUGaa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 25349 0.66 0.978738
Target:  5'- --cGUCCACGugGCggcggucGCGGCgauccgcacGAAGAa -3'
miRNA:   3'- guuCAGGUGCugCG-------CGCUGaa-------CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 11105 0.68 0.949273
Target:  5'- ----aCCACGGCGuCGUGGCgcugGAGGAc -3'
miRNA:   3'- guucaGGUGCUGC-GCGCUGaa--CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 130436 0.69 0.935098
Target:  5'- uCGAGUCCGCggaccucggcccGACGgGgGGCUcgGAGGAa -3'
miRNA:   3'- -GUUCAGGUG------------CUGCgCgCUGAa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 4584 0.67 0.971066
Target:  5'- gCGGGU-CGCGGUGCGCGGCgacGAAGGc -3'
miRNA:   3'- -GUUCAgGUGCUGCGCGCUGaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 12588 0.66 0.98327
Target:  5'- -uAGagCGCGACGaGCGGCUgucgGAAGGg -3'
miRNA:   3'- guUCagGUGCUGCgCGCUGAa---CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 121166 0.68 0.961222
Target:  5'- aCAAG-CCGCGGacgUGCGCGACaUGcGGGAg -3'
miRNA:   3'- -GUUCaGGUGCU---GCGCGCUGaAC-UUCU- -5'
6448 3' -51.7 NC_001847.1 + 80820 0.68 0.949273
Target:  5'- gAAGgCCGCG-CGcCGCGACUgGggGGg -3'
miRNA:   3'- gUUCaGGUGCuGC-GCGCUGAaCuuCU- -5'
6448 3' -51.7 NC_001847.1 + 44443 0.67 0.97654
Target:  5'- aCGGGggCGCGGCGCGCGGCa------ -3'
miRNA:   3'- -GUUCagGUGCUGCGCGCUGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 52513 0.66 0.978973
Target:  5'- gGAG-CgCGCGGcCGCGCGGCccgGggGAu -3'
miRNA:   3'- gUUCaG-GUGCU-GCGCGCUGaa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 38141 0.68 0.953498
Target:  5'- cCGAGUCUucgcGCGGCGCGCcGCcccGAGGGa -3'
miRNA:   3'- -GUUCAGG----UGCUGCGCGcUGaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 80957 0.68 0.95748
Target:  5'- --uGUCCGCGAgCGCGCGgucaaaguGCUccGggGAg -3'
miRNA:   3'- guuCAGGUGCU-GCGCGC--------UGAa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 99015 0.77 0.537749
Target:  5'- --cGUCCGCGGCGCGCGcgGCUUcgugGAAGGc -3'
miRNA:   3'- guuCAGGUGCUGCGCGC--UGAA----CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 87748 0.75 0.684677
Target:  5'- --cGUCUACGACGUGCGGCUcGAcGGc -3'
miRNA:   3'- guuCAGGUGCUGCGCGCUGAaCUuCU- -5'
6448 3' -51.7 NC_001847.1 + 94496 0.76 0.610821
Target:  5'- gAAGgCCGCGAgGCGCGGCggacgUGggGGa -3'
miRNA:   3'- gUUCaGGUGCUgCGCGCUGa----ACuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.