miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 3' -51.7 NC_001847.1 + 38141 0.68 0.953498
Target:  5'- cCGAGUCUucgcGCGGCGCGCcGCcccGAGGGa -3'
miRNA:   3'- -GUUCAGG----UGCUGCGCGcUGaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 44443 0.67 0.97654
Target:  5'- aCGGGggCGCGGCGCGCGGCa------ -3'
miRNA:   3'- -GUUCagGUGCUGCGCGCUGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 45858 0.66 0.986868
Target:  5'- cCGAGgccucggCCGCGGCGCGCGAa------- -3'
miRNA:   3'- -GUUCa------GGUGCUGCGCGCUgaacuucu -5'
6448 3' -51.7 NC_001847.1 + 48055 0.69 0.924379
Target:  5'- gCGAGUCCGCGcGCGCcGCGAaaggcGggGGc -3'
miRNA:   3'- -GUUCAGGUGC-UGCG-CGCUgaa--CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 50903 0.68 0.953498
Target:  5'- gCAGG-CCACGuacCGCGCGGCcgUGGAa- -3'
miRNA:   3'- -GUUCaGGUGCu--GCGCGCUGa-ACUUcu -5'
6448 3' -51.7 NC_001847.1 + 50995 0.67 0.973907
Target:  5'- gAGGUCCcCGGCGCGCGuC---AAGAu -3'
miRNA:   3'- gUUCAGGuGCUGCGCGCuGaacUUCU- -5'
6448 3' -51.7 NC_001847.1 + 52244 0.66 0.98327
Target:  5'- cCGGGcgCCGCG-CGcCGCGGCUUGGc-- -3'
miRNA:   3'- -GUUCa-GGUGCuGC-GCGCUGAACUucu -5'
6448 3' -51.7 NC_001847.1 + 52513 0.66 0.978973
Target:  5'- gGAG-CgCGCGGcCGCGCGGCccgGggGAu -3'
miRNA:   3'- gUUCaG-GUGCU-GCGCGCUGaa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 52774 0.68 0.949273
Target:  5'- gCAGGUCaCGCGGCGCGCG-CUc----- -3'
miRNA:   3'- -GUUCAG-GUGCUGCGCGCuGAacuucu -5'
6448 3' -51.7 NC_001847.1 + 52907 0.68 0.944799
Target:  5'- cUAGGUCCGCGG-GCaGCGGCUcGggGc -3'
miRNA:   3'- -GUUCAGGUGCUgCG-CGCUGAaCuuCu -5'
6448 3' -51.7 NC_001847.1 + 53281 0.66 0.981213
Target:  5'- cCGAGUCCgACGaACGCGCG-CUcGAu-- -3'
miRNA:   3'- -GUUCAGG-UGC-UGCGCGCuGAaCUucu -5'
6448 3' -51.7 NC_001847.1 + 54014 0.71 0.871443
Target:  5'- aCAcGUCCGgucCGACGCGCGGCgcgcucUGGAGc -3'
miRNA:   3'- -GUuCAGGU---GCUGCGCGCUGa-----ACUUCu -5'
6448 3' -51.7 NC_001847.1 + 54043 0.67 0.968009
Target:  5'- --uGUCCucguCGGCGCGCGGC--GAGGc -3'
miRNA:   3'- guuCAGGu---GCUGCGCGCUGaaCUUCu -5'
6448 3' -51.7 NC_001847.1 + 54326 0.68 0.949273
Target:  5'- cCAAGU-CGCGGCGCGCGGCc------ -3'
miRNA:   3'- -GUUCAgGUGCUGCGCGCUGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 54404 1.09 0.006688
Target:  5'- cCAAGUCCACGACGCGCGACUUGAAGAu -3'
miRNA:   3'- -GUUCAGGUGCUGCGCGCUGAACUUCU- -5'
6448 3' -51.7 NC_001847.1 + 55837 0.67 0.968009
Target:  5'- --cGUCCAUGACGCGCaGCUg----- -3'
miRNA:   3'- guuCAGGUGCUGCGCGcUGAacuucu -5'
6448 3' -51.7 NC_001847.1 + 56300 0.66 0.98327
Target:  5'- -cAGUCUGCGGCgucGCGCGGCgggcgcgcGAAGGc -3'
miRNA:   3'- guUCAGGUGCUG---CGCGCUGaa------CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 58018 0.66 0.986868
Target:  5'- -cGGU-CGCG-CGCGCGcCUUGAAGc -3'
miRNA:   3'- guUCAgGUGCuGCGCGCuGAACUUCu -5'
6448 3' -51.7 NC_001847.1 + 61266 0.68 0.961222
Target:  5'- --cGUCCGCGGCGCGCG-Cg------ -3'
miRNA:   3'- guuCAGGUGCUGCGCGCuGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 61703 0.67 0.96473
Target:  5'- -uAGUCCAUGcCGCGCGuCgccaGAGGGc -3'
miRNA:   3'- guUCAGGUGCuGCGCGCuGaa--CUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.