miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 3' -51.7 NC_001847.1 + 27623 0.69 0.935098
Target:  5'- uCGAGUCCGCggaccucggcccGACGgGgGGCUcgGAGGAa -3'
miRNA:   3'- -GUUCAGGUG------------CUGCgCgCUGAa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 73432 0.69 0.940075
Target:  5'- cCGAGcgCCcucugGCGACGCGCGGCaUGGAc- -3'
miRNA:   3'- -GUUCa-GG-----UGCUGCGCGCUGaACUUcu -5'
6448 3' -51.7 NC_001847.1 + 52907 0.68 0.944799
Target:  5'- cUAGGUCCGCGG-GCaGCGGCUcGggGc -3'
miRNA:   3'- -GUUCAGGUGCUgCG-CGCUGAaCuuCu -5'
6448 3' -51.7 NC_001847.1 + 96991 0.68 0.949273
Target:  5'- -cGGUCCcucgggGCGGCGCGCcGCgcGAAGAc -3'
miRNA:   3'- guUCAGG------UGCUGCGCGcUGaaCUUCU- -5'
6448 3' -51.7 NC_001847.1 + 32055 0.68 0.949273
Target:  5'- aAGGUCCGgGGCGCGgaGACggcGggGGc -3'
miRNA:   3'- gUUCAGGUgCUGCGCg-CUGaa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 80820 0.68 0.949273
Target:  5'- gAAGgCCGCG-CGcCGCGACUgGggGGg -3'
miRNA:   3'- gUUCaGGUGCuGC-GCGCUGAaCuuCU- -5'
6448 3' -51.7 NC_001847.1 + 11105 0.68 0.949273
Target:  5'- ----aCCACGGCGuCGUGGCgcugGAGGAc -3'
miRNA:   3'- guucaGGUGCUGC-GCGCUGaa--CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 52774 0.68 0.949273
Target:  5'- gCAGGUCaCGCGGCGCGCG-CUc----- -3'
miRNA:   3'- -GUUCAG-GUGCUGCGCGCuGAacuucu -5'
6448 3' -51.7 NC_001847.1 + 54326 0.68 0.949273
Target:  5'- cCAAGU-CGCGGCGCGCGGCc------ -3'
miRNA:   3'- -GUUCAgGUGCUGCGCGCUGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 38141 0.68 0.953498
Target:  5'- cCGAGUCUucgcGCGGCGCGCcGCcccGAGGGa -3'
miRNA:   3'- -GUUCAGG----UGCUGCGCGcUGaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 98807 0.68 0.953498
Target:  5'- ----gCCGCGGCGCGCGGCacGAGc- -3'
miRNA:   3'- guucaGGUGCUGCGCGCUGaaCUUcu -5'
6448 3' -51.7 NC_001847.1 + 103748 0.68 0.953498
Target:  5'- --cGUCCACGaauucGCGCGCuggGACUUGGGu- -3'
miRNA:   3'- guuCAGGUGC-----UGCGCG---CUGAACUUcu -5'
6448 3' -51.7 NC_001847.1 + 50903 0.68 0.953498
Target:  5'- gCAGG-CCACGuacCGCGCGGCcgUGGAa- -3'
miRNA:   3'- -GUUCaGGUGCu--GCGCGCUGa-ACUUcu -5'
6448 3' -51.7 NC_001847.1 + 80957 0.68 0.95748
Target:  5'- --uGUCCGCGAgCGCGCGgucaaaguGCUccGggGAg -3'
miRNA:   3'- guuCAGGUGCU-GCGCGC--------UGAa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 121166 0.68 0.961222
Target:  5'- aCAAG-CCGCGGacgUGCGCGACaUGcGGGAg -3'
miRNA:   3'- -GUUCaGGUGCU---GCGCGCUGaAC-UUCU- -5'
6448 3' -51.7 NC_001847.1 + 61266 0.68 0.961222
Target:  5'- --cGUCCGCGGCGCGCG-Cg------ -3'
miRNA:   3'- guuCAGGUGCUGCGCGCuGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 61703 0.67 0.96473
Target:  5'- -uAGUCCAUGcCGCGCGuCgccaGAGGGc -3'
miRNA:   3'- guUCAGGUGCuGCGCGCuGaa--CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 122084 0.67 0.96473
Target:  5'- ---aUCgGCGACGCcgGCGACgaGGAGAc -3'
miRNA:   3'- guucAGgUGCUGCG--CGCUGaaCUUCU- -5'
6448 3' -51.7 NC_001847.1 + 32327 0.67 0.968009
Target:  5'- gGGGcCCGCG-CgGCGCGGCgcgGAGGGg -3'
miRNA:   3'- gUUCaGGUGCuG-CGCGCUGaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 55837 0.67 0.968009
Target:  5'- --cGUCCAUGACGCGCaGCUg----- -3'
miRNA:   3'- guuCAGGUGCUGCGCGcUGAacuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.