miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 3' -51.7 NC_001847.1 + 67456 0.67 0.97654
Target:  5'- gAGGUCCAgCGcGCGCGCGGCg------ -3'
miRNA:   3'- gUUCAGGU-GC-UGCGCGCUGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 36781 0.67 0.97654
Target:  5'- --cGcCCGCGACGCG-GACUuUGggGc -3'
miRNA:   3'- guuCaGGUGCUGCGCgCUGA-ACuuCu -5'
6448 3' -51.7 NC_001847.1 + 117309 0.67 0.973907
Target:  5'- gCGAG-CCGCGAUGgGCGACcuagcggcgGggGGc -3'
miRNA:   3'- -GUUCaGGUGCUGCgCGCUGaa-------CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 50995 0.67 0.973907
Target:  5'- gAGGUCCcCGGCGCGCGuC---AAGAu -3'
miRNA:   3'- gUUCAGGuGCUGCGCGCuGaacUUCU- -5'
6448 3' -51.7 NC_001847.1 + 37343 0.67 0.973907
Target:  5'- -cGG-CCACG-CGCGCGACcgUGgcGGa -3'
miRNA:   3'- guUCaGGUGCuGCGCGCUGa-ACuuCU- -5'
6448 3' -51.7 NC_001847.1 + 4584 0.67 0.971066
Target:  5'- gCGGGU-CGCGGUGCGCGGCgacGAAGGc -3'
miRNA:   3'- -GUUCAgGUGCUGCGCGCUGaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 55837 0.67 0.968009
Target:  5'- --cGUCCAUGACGCGCaGCUg----- -3'
miRNA:   3'- guuCAGGUGCUGCGCGcUGAacuucu -5'
6448 3' -51.7 NC_001847.1 + 32327 0.67 0.968009
Target:  5'- gGGGcCCGCG-CgGCGCGGCgcgGAGGGg -3'
miRNA:   3'- gUUCaGGUGCuG-CGCGCUGaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 54043 0.67 0.968009
Target:  5'- --uGUCCucguCGGCGCGCGGC--GAGGc -3'
miRNA:   3'- guuCAGGu---GCUGCGCGCUGaaCUUCu -5'
6448 3' -51.7 NC_001847.1 + 61703 0.67 0.96473
Target:  5'- -uAGUCCAUGcCGCGCGuCgccaGAGGGc -3'
miRNA:   3'- guUCAGGUGCuGCGCGCuGaa--CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 122084 0.67 0.96473
Target:  5'- ---aUCgGCGACGCcgGCGACgaGGAGAc -3'
miRNA:   3'- guucAGgUGCUGCG--CGCUGaaCUUCU- -5'
6448 3' -51.7 NC_001847.1 + 121166 0.68 0.961222
Target:  5'- aCAAG-CCGCGGacgUGCGCGACaUGcGGGAg -3'
miRNA:   3'- -GUUCaGGUGCU---GCGCGCUGaAC-UUCU- -5'
6448 3' -51.7 NC_001847.1 + 61266 0.68 0.961222
Target:  5'- --cGUCCGCGGCGCGCG-Cg------ -3'
miRNA:   3'- guuCAGGUGCUGCGCGCuGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 80957 0.68 0.95748
Target:  5'- --uGUCCGCGAgCGCGCGgucaaaguGCUccGggGAg -3'
miRNA:   3'- guuCAGGUGCU-GCGCGC--------UGAa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 103748 0.68 0.953498
Target:  5'- --cGUCCACGaauucGCGCGCuggGACUUGGGu- -3'
miRNA:   3'- guuCAGGUGC-----UGCGCG---CUGAACUUcu -5'
6448 3' -51.7 NC_001847.1 + 98807 0.68 0.953498
Target:  5'- ----gCCGCGGCGCGCGGCacGAGc- -3'
miRNA:   3'- guucaGGUGCUGCGCGCUGaaCUUcu -5'
6448 3' -51.7 NC_001847.1 + 38141 0.68 0.953498
Target:  5'- cCGAGUCUucgcGCGGCGCGCcGCcccGAGGGa -3'
miRNA:   3'- -GUUCAGG----UGCUGCGCGcUGaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 50903 0.68 0.953498
Target:  5'- gCAGG-CCACGuacCGCGCGGCcgUGGAa- -3'
miRNA:   3'- -GUUCaGGUGCu--GCGCGCUGa-ACUUcu -5'
6448 3' -51.7 NC_001847.1 + 32055 0.68 0.949273
Target:  5'- aAGGUCCGgGGCGCGgaGACggcGggGGc -3'
miRNA:   3'- gUUCAGGUgCUGCGCg-CUGaa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 96991 0.68 0.949273
Target:  5'- -cGGUCCcucgggGCGGCGCGCcGCgcGAAGAc -3'
miRNA:   3'- guUCAGG------UGCUGCGCGcUGaaCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.