miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 3' -51.7 NC_001847.1 + 54404 1.09 0.006688
Target:  5'- cCAAGUCCACGACGCGCGACUUGAAGAu -3'
miRNA:   3'- -GUUCAGGUGCUGCGCGCUGAACUUCU- -5'
6448 3' -51.7 NC_001847.1 + 69708 0.8 0.385577
Target:  5'- -cGGUCCGCGGCGCGCGGCUg----- -3'
miRNA:   3'- guUCAGGUGCUGCGCGCUGAacuucu -5'
6448 3' -51.7 NC_001847.1 + 82899 0.8 0.403041
Target:  5'- cCAAG-CCGCGGCGCGCGGCgcccGggGGc -3'
miRNA:   3'- -GUUCaGGUGCUGCGCGCUGaa--CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 99015 0.77 0.537749
Target:  5'- --cGUCCGCGGCGCGCGcgGCUUcgugGAAGGc -3'
miRNA:   3'- guuCAGGUGCUGCGCGC--UGAA----CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 94496 0.76 0.610821
Target:  5'- gAAGgCCGCGAgGCGCGGCggacgUGggGGa -3'
miRNA:   3'- gUUCaGGUGCUgCGCGCUGa----ACuuCU- -5'
6448 3' -51.7 NC_001847.1 + 87748 0.75 0.684677
Target:  5'- --cGUCUACGACGUGCGGCUcGAcGGc -3'
miRNA:   3'- guuCAGGUGCUGCGCGCUGAaCUuCU- -5'
6448 3' -51.7 NC_001847.1 + 62192 0.74 0.726063
Target:  5'- gAGGUCCACGcgcGCGUGCGGCUgcgUGAGc- -3'
miRNA:   3'- gUUCAGGUGC---UGCGCGCUGA---ACUUcu -5'
6448 3' -51.7 NC_001847.1 + 95821 0.72 0.822055
Target:  5'- -uGGUCCGCGACcaGCGCGGCUUc---- -3'
miRNA:   3'- guUCAGGUGCUG--CGCGCUGAAcuucu -5'
6448 3' -51.7 NC_001847.1 + 32285 0.71 0.839343
Target:  5'- --cGUCCGCGugGCGCGGCc------ -3'
miRNA:   3'- guuCAGGUGCugCGCGCUGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 14707 0.71 0.847688
Target:  5'- --cGUUCGCGACGCGCGGgcaGGAGGc -3'
miRNA:   3'- guuCAGGUGCUGCGCGCUgaaCUUCU- -5'
6448 3' -51.7 NC_001847.1 + 27948 0.71 0.855825
Target:  5'- uGGG-CCGCGGCGCGCGcGCUcgcggucgcggUGGAGGc -3'
miRNA:   3'- gUUCaGGUGCUGCGCGC-UGA-----------ACUUCU- -5'
6448 3' -51.7 NC_001847.1 + 130761 0.71 0.855825
Target:  5'- uGGG-CCGCGGCGCGCGcGCUcgcggucgcggUGGAGGc -3'
miRNA:   3'- gUUCaGGUGCUGCGCGC-UGA-----------ACUUCU- -5'
6448 3' -51.7 NC_001847.1 + 34784 0.71 0.871443
Target:  5'- -cGG-CCGCGGCGCGCGGCUa----- -3'
miRNA:   3'- guUCaGGUGCUGCGCGCUGAacuucu -5'
6448 3' -51.7 NC_001847.1 + 54014 0.71 0.871443
Target:  5'- aCAcGUCCGgucCGACGCGCGGCgcgcucUGGAGc -3'
miRNA:   3'- -GUuCAGGU---GCUGCGCGCUGa-----ACUUCu -5'
6448 3' -51.7 NC_001847.1 + 36074 0.71 0.871443
Target:  5'- aCAGGcgCgCugGACGCGCGGCUggcGGAGc -3'
miRNA:   3'- -GUUCa-G-GugCUGCGCGCUGAa--CUUCu -5'
6448 3' -51.7 NC_001847.1 + 115596 0.69 0.918636
Target:  5'- --cGUCgAUcGCGUGCGGCUUGGAGu -3'
miRNA:   3'- guuCAGgUGcUGCGCGCUGAACUUCu -5'
6448 3' -51.7 NC_001847.1 + 100875 0.69 0.924379
Target:  5'- gGGGUCgGCGGCagggGCGCGGCcggcgGGAGAc -3'
miRNA:   3'- gUUCAGgUGCUG----CGCGCUGaa---CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 48055 0.69 0.924379
Target:  5'- gCGAGUCCGCGcGCGCcGCGAaaggcGggGGc -3'
miRNA:   3'- -GUUCAGGUGC-UGCG-CGCUgaa--CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 79836 0.69 0.935098
Target:  5'- gAAGUggcgaCCGCGGCGUcugagaaguccgGCGugUUGAAGGc -3'
miRNA:   3'- gUUCA-----GGUGCUGCG------------CGCugAACUUCU- -5'
6448 3' -51.7 NC_001847.1 + 27623 0.69 0.935098
Target:  5'- uCGAGUCCGCggaccucggcccGACGgGgGGCUcgGAGGAa -3'
miRNA:   3'- -GUUCAGGUG------------CUGCgCgCUGAa-CUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.