miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 3' -51.7 NC_001847.1 + 4584 0.67 0.971066
Target:  5'- gCGGGU-CGCGGUGCGCGGCgacGAAGGc -3'
miRNA:   3'- -GUUCAgGUGCUGCGCGCUGaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 7224 0.66 0.985152
Target:  5'- --cGUCCAUGGCGCugcaGCGGCUgGucGGg -3'
miRNA:   3'- guuCAGGUGCUGCG----CGCUGAaCuuCU- -5'
6448 3' -51.7 NC_001847.1 + 11105 0.68 0.949273
Target:  5'- ----aCCACGGCGuCGUGGCgcugGAGGAc -3'
miRNA:   3'- guucaGGUGCUGC-GCGCUGaa--CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 12588 0.66 0.98327
Target:  5'- -uAGagCGCGACGaGCGGCUgucgGAAGGg -3'
miRNA:   3'- guUCagGUGCUGCgCGCUGAa---CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 14707 0.71 0.847688
Target:  5'- --cGUUCGCGACGCGCGGgcaGGAGGc -3'
miRNA:   3'- guuCAGGUGCUGCGCGCUgaaCUUCU- -5'
6448 3' -51.7 NC_001847.1 + 24765 0.66 0.981213
Target:  5'- gAGGU--GCGACGCGCGGuCgucGAAGAg -3'
miRNA:   3'- gUUCAggUGCUGCGCGCU-Gaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 25349 0.66 0.978738
Target:  5'- --cGUCCACGugGCggcggucGCGGCgauccgcacGAAGAa -3'
miRNA:   3'- guuCAGGUGCugCG-------CGCUGaa-------CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 27623 0.69 0.935098
Target:  5'- uCGAGUCCGCggaccucggcccGACGgGgGGCUcgGAGGAa -3'
miRNA:   3'- -GUUCAGGUG------------CUGCgCgCUGAa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 27948 0.71 0.855825
Target:  5'- uGGG-CCGCGGCGCGCGcGCUcgcggucgcggUGGAGGc -3'
miRNA:   3'- gUUCaGGUGCUGCGCGC-UGA-----------ACUUCU- -5'
6448 3' -51.7 NC_001847.1 + 30200 0.66 0.981213
Target:  5'- -cGGUgCGCGGCGCGCG-CgccGAAGc -3'
miRNA:   3'- guUCAgGUGCUGCGCGCuGaa-CUUCu -5'
6448 3' -51.7 NC_001847.1 + 32055 0.68 0.949273
Target:  5'- aAGGUCCGgGGCGCGgaGACggcGggGGc -3'
miRNA:   3'- gUUCAGGUgCUGCGCg-CUGaa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 32285 0.71 0.839343
Target:  5'- --cGUCCGCGugGCGCGGCc------ -3'
miRNA:   3'- guuCAGGUGCugCGCGCUGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 32327 0.67 0.968009
Target:  5'- gGGGcCCGCG-CgGCGCGGCgcgGAGGGg -3'
miRNA:   3'- gUUCaGGUGCuG-CGCGCUGaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 33488 0.67 0.97654
Target:  5'- gCGAuGUCCGCGGCG-GCGGCgcgGgcGGc -3'
miRNA:   3'- -GUU-CAGGUGCUGCgCGCUGaa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 34377 0.66 0.985152
Target:  5'- gCGAGcgCCAUGGCGCGgGGCgaccuGGAc -3'
miRNA:   3'- -GUUCa-GGUGCUGCGCgCUGaacu-UCU- -5'
6448 3' -51.7 NC_001847.1 + 34784 0.71 0.871443
Target:  5'- -cGG-CCGCGGCGCGCGGCUa----- -3'
miRNA:   3'- guUCaGGUGCUGCGCGCUGAacuucu -5'
6448 3' -51.7 NC_001847.1 + 35891 0.66 0.978973
Target:  5'- gGAGUCgGCGGCG-GCGGCgUGGGa- -3'
miRNA:   3'- gUUCAGgUGCUGCgCGCUGaACUUcu -5'
6448 3' -51.7 NC_001847.1 + 36074 0.71 0.871443
Target:  5'- aCAGGcgCgCugGACGCGCGGCUggcGGAGc -3'
miRNA:   3'- -GUUCa-G-GugCUGCGCGCUGAa--CUUCu -5'
6448 3' -51.7 NC_001847.1 + 36781 0.67 0.97654
Target:  5'- --cGcCCGCGACGCG-GACUuUGggGc -3'
miRNA:   3'- guuCaGGUGCUGCGCgCUGA-ACuuCu -5'
6448 3' -51.7 NC_001847.1 + 37343 0.67 0.973907
Target:  5'- -cGG-CCACG-CGCGCGACcgUGgcGGa -3'
miRNA:   3'- guUCaGGUGCuGCGCGCUGa-ACuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.