miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 3' -51.7 NC_001847.1 + 135140 0.66 0.986868
Target:  5'- gGGGcCCGCG-CgGCGCGGCgcgGAGGG -3'
miRNA:   3'- gUUCaGGUGCuG-CGCGCUGaa-CUUCU -5'
6448 3' -51.7 NC_001847.1 + 130761 0.71 0.855825
Target:  5'- uGGG-CCGCGGCGCGCGcGCUcgcggucgcggUGGAGGc -3'
miRNA:   3'- gUUCaGGUGCUGCGCGC-UGA-----------ACUUCU- -5'
6448 3' -51.7 NC_001847.1 + 130436 0.69 0.935098
Target:  5'- uCGAGUCCGCggaccucggcccGACGgGgGGCUcgGAGGAa -3'
miRNA:   3'- -GUUCAGGUG------------CUGCgCgCUGAa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 122084 0.67 0.96473
Target:  5'- ---aUCgGCGACGCcgGCGACgaGGAGAc -3'
miRNA:   3'- guucAGgUGCUGCG--CGCUGaaCUUCU- -5'
6448 3' -51.7 NC_001847.1 + 121166 0.68 0.961222
Target:  5'- aCAAG-CCGCGGacgUGCGCGACaUGcGGGAg -3'
miRNA:   3'- -GUUCaGGUGCU---GCGCGCUGaAC-UUCU- -5'
6448 3' -51.7 NC_001847.1 + 117309 0.67 0.973907
Target:  5'- gCGAG-CCGCGAUGgGCGACcuagcggcgGggGGc -3'
miRNA:   3'- -GUUCaGGUGCUGCgCGCUGaa-------CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 115596 0.69 0.918636
Target:  5'- --cGUCgAUcGCGUGCGGCUUGGAGu -3'
miRNA:   3'- guuCAGgUGcUGCGCGCUGAACUUCu -5'
6448 3' -51.7 NC_001847.1 + 103748 0.68 0.953498
Target:  5'- --cGUCCACGaauucGCGCGCuggGACUUGGGu- -3'
miRNA:   3'- guuCAGGUGC-----UGCGCG---CUGAACUUcu -5'
6448 3' -51.7 NC_001847.1 + 100875 0.69 0.924379
Target:  5'- gGGGUCgGCGGCagggGCGCGGCcggcgGGAGAc -3'
miRNA:   3'- gUUCAGgUGCUG----CGCGCUGaa---CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 99015 0.77 0.537749
Target:  5'- --cGUCCGCGGCGCGCGcgGCUUcgugGAAGGc -3'
miRNA:   3'- guuCAGGUGCUGCGCGC--UGAA----CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 98807 0.68 0.953498
Target:  5'- ----gCCGCGGCGCGCGGCacGAGc- -3'
miRNA:   3'- guucaGGUGCUGCGCGCUGaaCUUcu -5'
6448 3' -51.7 NC_001847.1 + 96991 0.68 0.949273
Target:  5'- -cGGUCCcucgggGCGGCGCGCcGCgcGAAGAc -3'
miRNA:   3'- guUCAGG------UGCUGCGCGcUGaaCUUCU- -5'
6448 3' -51.7 NC_001847.1 + 95821 0.72 0.822055
Target:  5'- -uGGUCCGCGACcaGCGCGGCUUc---- -3'
miRNA:   3'- guUCAGGUGCUG--CGCGCUGAAcuucu -5'
6448 3' -51.7 NC_001847.1 + 94496 0.76 0.610821
Target:  5'- gAAGgCCGCGAgGCGCGGCggacgUGggGGa -3'
miRNA:   3'- gUUCaGGUGCUgCGCGCUGa----ACuuCU- -5'
6448 3' -51.7 NC_001847.1 + 87748 0.75 0.684677
Target:  5'- --cGUCUACGACGUGCGGCUcGAcGGc -3'
miRNA:   3'- guuCAGGUGCUGCGCGCUGAaCUuCU- -5'
6448 3' -51.7 NC_001847.1 + 85078 0.67 0.97654
Target:  5'- cCGGGUCCGCGccGCGCGCGGa------- -3'
miRNA:   3'- -GUUCAGGUGC--UGCGCGCUgaacuucu -5'
6448 3' -51.7 NC_001847.1 + 83160 0.66 0.978973
Target:  5'- --cGUCCGCGAUGCGcCGGCg------ -3'
miRNA:   3'- guuCAGGUGCUGCGC-GCUGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 82899 0.8 0.403041
Target:  5'- cCAAG-CCGCGGCGCGCGGCgcccGggGGc -3'
miRNA:   3'- -GUUCaGGUGCUGCGCGCUGaa--CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 80957 0.68 0.95748
Target:  5'- --uGUCCGCGAgCGCGCGgucaaaguGCUccGggGAg -3'
miRNA:   3'- guuCAGGUGCU-GCGCGC--------UGAa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 80820 0.68 0.949273
Target:  5'- gAAGgCCGCG-CGcCGCGACUgGggGGg -3'
miRNA:   3'- gUUCaGGUGCuGC-GCGCUGAaCuuCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.