miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 3' -51.7 NC_001847.1 + 82899 0.8 0.403041
Target:  5'- cCAAG-CCGCGGCGCGCGGCgcccGggGGc -3'
miRNA:   3'- -GUUCaGGUGCUGCGCGCUGaa--CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 61703 0.67 0.96473
Target:  5'- -uAGUCCAUGcCGCGCGuCgccaGAGGGc -3'
miRNA:   3'- guUCAGGUGCuGCGCGCuGaa--CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 54043 0.67 0.968009
Target:  5'- --uGUCCucguCGGCGCGCGGC--GAGGc -3'
miRNA:   3'- guuCAGGu---GCUGCGCGCUGaaCUUCu -5'
6448 3' -51.7 NC_001847.1 + 135140 0.66 0.986868
Target:  5'- gGGGcCCGCG-CgGCGCGGCgcgGAGGG -3'
miRNA:   3'- gUUCaGGUGCuG-CGCGCUGaa-CUUCU -5'
6448 3' -51.7 NC_001847.1 + 34784 0.71 0.871443
Target:  5'- -cGG-CCGCGGCGCGCGGCUa----- -3'
miRNA:   3'- guUCaGGUGCUGCGCGCUGAacuucu -5'
6448 3' -51.7 NC_001847.1 + 36074 0.71 0.871443
Target:  5'- aCAGGcgCgCugGACGCGCGGCUggcGGAGc -3'
miRNA:   3'- -GUUCa-G-GugCUGCGCGCUGAa--CUUCu -5'
6448 3' -51.7 NC_001847.1 + 100875 0.69 0.924379
Target:  5'- gGGGUCgGCGGCagggGCGCGGCcggcgGGAGAc -3'
miRNA:   3'- gUUCAGgUGCUG----CGCGCUGaa---CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 79836 0.69 0.935098
Target:  5'- gAAGUggcgaCCGCGGCGUcugagaaguccgGCGugUUGAAGGc -3'
miRNA:   3'- gUUCA-----GGUGCUGCG------------CGCugAACUUCU- -5'
6448 3' -51.7 NC_001847.1 + 32055 0.68 0.949273
Target:  5'- aAGGUCCGgGGCGCGgaGACggcGggGGc -3'
miRNA:   3'- gUUCAGGUgCUGCGCg-CUGaa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 61266 0.68 0.961222
Target:  5'- --cGUCCGCGGCGCGCG-Cg------ -3'
miRNA:   3'- guuCAGGUGCUGCGCGCuGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 80820 0.68 0.949273
Target:  5'- gAAGgCCGCG-CGcCGCGACUgGggGGg -3'
miRNA:   3'- gUUCaGGUGCuGC-GCGCUGAaCuuCU- -5'
6448 3' -51.7 NC_001847.1 + 11105 0.68 0.949273
Target:  5'- ----aCCACGGCGuCGUGGCgcugGAGGAc -3'
miRNA:   3'- guucaGGUGCUGC-GCGCUGaa--CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 95821 0.72 0.822055
Target:  5'- -uGGUCCGCGACcaGCGCGGCUUc---- -3'
miRNA:   3'- guUCAGGUGCUG--CGCGCUGAAcuucu -5'
6448 3' -51.7 NC_001847.1 + 50903 0.68 0.953498
Target:  5'- gCAGG-CCACGuacCGCGCGGCcgUGGAa- -3'
miRNA:   3'- -GUUCaGGUGCu--GCGCGCUGa-ACUUcu -5'
6448 3' -51.7 NC_001847.1 + 32285 0.71 0.839343
Target:  5'- --cGUCCGCGugGCGCGGCc------ -3'
miRNA:   3'- guuCAGGUGCugCGCGCUGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 130436 0.69 0.935098
Target:  5'- uCGAGUCCGCggaccucggcccGACGgGgGGCUcgGAGGAa -3'
miRNA:   3'- -GUUCAGGUG------------CUGCgCgCUGAa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 121166 0.68 0.961222
Target:  5'- aCAAG-CCGCGGacgUGCGCGACaUGcGGGAg -3'
miRNA:   3'- -GUUCaGGUGCU---GCGCGCUGaAC-UUCU- -5'
6448 3' -51.7 NC_001847.1 + 122084 0.67 0.96473
Target:  5'- ---aUCgGCGACGCcgGCGACgaGGAGAc -3'
miRNA:   3'- guucAGgUGCUGCG--CGCUGaaCUUCU- -5'
6448 3' -51.7 NC_001847.1 + 130761 0.71 0.855825
Target:  5'- uGGG-CCGCGGCGCGCGcGCUcgcggucgcggUGGAGGc -3'
miRNA:   3'- gUUCaGGUGCUGCGCGC-UGA-----------ACUUCU- -5'
6448 3' -51.7 NC_001847.1 + 115596 0.69 0.918636
Target:  5'- --cGUCgAUcGCGUGCGGCUUGGAGu -3'
miRNA:   3'- guuCAGgUGcUGCGCGCUGAACUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.