miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 3' -51.7 NC_001847.1 + 73432 0.69 0.940075
Target:  5'- cCGAGcgCCcucugGCGACGCGCGGCaUGGAc- -3'
miRNA:   3'- -GUUCa-GG-----UGCUGCGCGCUGaACUUcu -5'
6448 3' -51.7 NC_001847.1 + 55837 0.67 0.968009
Target:  5'- --cGUCCAUGACGCGCaGCUg----- -3'
miRNA:   3'- guuCAGGUGCUGCGCGcUGAacuucu -5'
6448 3' -51.7 NC_001847.1 + 80957 0.68 0.95748
Target:  5'- --uGUCCGCGAgCGCGCGgucaaaguGCUccGggGAg -3'
miRNA:   3'- guuCAGGUGCU-GCGCGC--------UGAa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 38141 0.68 0.953498
Target:  5'- cCGAGUCUucgcGCGGCGCGCcGCcccGAGGGa -3'
miRNA:   3'- -GUUCAGG----UGCUGCGCGcUGaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 103748 0.68 0.953498
Target:  5'- --cGUCCACGaauucGCGCGCuggGACUUGGGu- -3'
miRNA:   3'- guuCAGGUGC-----UGCGCG---CUGAACUUcu -5'
6448 3' -51.7 NC_001847.1 + 98807 0.68 0.953498
Target:  5'- ----gCCGCGGCGCGCGGCacGAGc- -3'
miRNA:   3'- guucaGGUGCUGCGCGCUGaaCUUcu -5'
6448 3' -51.7 NC_001847.1 + 54326 0.68 0.949273
Target:  5'- cCAAGU-CGCGGCGCGCGGCc------ -3'
miRNA:   3'- -GUUCAgGUGCUGCGCGCUGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 52774 0.68 0.949273
Target:  5'- gCAGGUCaCGCGGCGCGCG-CUc----- -3'
miRNA:   3'- -GUUCAG-GUGCUGCGCGCuGAacuucu -5'
6448 3' -51.7 NC_001847.1 + 52907 0.68 0.944799
Target:  5'- cUAGGUCCGCGG-GCaGCGGCUcGggGc -3'
miRNA:   3'- -GUUCAGGUGCUgCG-CGCUGAaCuuCu -5'
6448 3' -51.7 NC_001847.1 + 32327 0.67 0.968009
Target:  5'- gGGGcCCGCG-CgGCGCGGCgcgGAGGGg -3'
miRNA:   3'- gUUCaGGUGCuG-CGCGCUGaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 50995 0.67 0.973907
Target:  5'- gAGGUCCcCGGCGCGCGuC---AAGAu -3'
miRNA:   3'- gUUCAGGuGCUGCGCGCuGaacUUCU- -5'
6448 3' -51.7 NC_001847.1 + 117309 0.67 0.973907
Target:  5'- gCGAG-CCGCGAUGgGCGACcuagcggcgGggGGc -3'
miRNA:   3'- -GUUCaGGUGCUGCgCGCUGaa-------CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 65493 0.66 0.986868
Target:  5'- -cGGUCCAUGGCGCG-GugU-GggGc -3'
miRNA:   3'- guUCAGGUGCUGCGCgCugAaCuuCu -5'
6448 3' -51.7 NC_001847.1 + 72582 0.66 0.985152
Target:  5'- cCGAGcaaCCGCGGC-CGCGGCggcaGAAGGg -3'
miRNA:   3'- -GUUCa--GGUGCUGcGCGCUGaa--CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 34377 0.66 0.985152
Target:  5'- gCGAGcgCCAUGGCGCGgGGCgaccuGGAc -3'
miRNA:   3'- -GUUCa-GGUGCUGCGCgCUGaacu-UCU- -5'
6448 3' -51.7 NC_001847.1 + 52244 0.66 0.98327
Target:  5'- cCGGGcgCCGCG-CGcCGCGGCUUGGc-- -3'
miRNA:   3'- -GUUCa-GGUGCuGC-GCGCUGAACUucu -5'
6448 3' -51.7 NC_001847.1 + 56300 0.66 0.98327
Target:  5'- -cAGUCUGCGGCgucGCGCGGCgggcgcgcGAAGGc -3'
miRNA:   3'- guUCAGGUGCUG---CGCGCUGaa------CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 53281 0.66 0.981213
Target:  5'- cCGAGUCCgACGaACGCGCG-CUcGAu-- -3'
miRNA:   3'- -GUUCAGG-UGC-UGCGCGCuGAaCUucu -5'
6448 3' -51.7 NC_001847.1 + 83160 0.66 0.978973
Target:  5'- --cGUCCGCGAUGCGcCGGCg------ -3'
miRNA:   3'- guuCAGGUGCUGCGC-GCUGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 85078 0.67 0.97654
Target:  5'- cCGGGUCCGCGccGCGCGCGGa------- -3'
miRNA:   3'- -GUUCAGGUGC--UGCGCGCUgaacuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.