miRNA display CGI


Results 41 - 60 of 583 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 5' -60.6 NC_001847.1 + 129937 0.66 0.706023
Target:  5'- --gCUUCC-GUCGCGGCgCGCuUGCCGc -3'
miRNA:   3'- gaaGAAGGuCGGCGUCG-GCG-GCGGCc -5'
6448 5' -60.6 NC_001847.1 + 105697 0.66 0.706023
Target:  5'- ----cUUCGGCCGCGGgCGgCGCCa- -3'
miRNA:   3'- gaagaAGGUCGGCGUCgGCgGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 30043 0.66 0.706023
Target:  5'- -----cCCGGCgGCc-CCGCCGCCGa -3'
miRNA:   3'- gaagaaGGUCGgCGucGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 132856 0.66 0.706023
Target:  5'- -----cCCGGCgGCc-CCGCCGCCGa -3'
miRNA:   3'- gaagaaGGUCGgCGucGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 42650 0.66 0.706023
Target:  5'- -gUCgugCCcuuuGUCGaagaGGCCGCCGCCGc -3'
miRNA:   3'- gaAGaa-GGu---CGGCg---UCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 17841 0.66 0.706023
Target:  5'- -gUCgcCCA-UCGCGGCucgcguugccagCGCCGCCGGg -3'
miRNA:   3'- gaAGaaGGUcGGCGUCG------------GCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 112832 0.66 0.696234
Target:  5'- -cUCUUCC-GCUGCA-UCGCCaCCGGc -3'
miRNA:   3'- gaAGAAGGuCGGCGUcGGCGGcGGCC- -5'
6448 5' -60.6 NC_001847.1 + 124558 0.66 0.696234
Target:  5'- -----gCCGGcCCGCgcgcgcgggggGGCCGCCggcGCCGGg -3'
miRNA:   3'- gaagaaGGUC-GGCG-----------UCGGCGG---CGGCC- -5'
6448 5' -60.6 NC_001847.1 + 37589 0.66 0.696234
Target:  5'- ----cUgCGGCUGCGGCgGCCggggGCCGGc -3'
miRNA:   3'- gaagaAgGUCGGCGUCGgCGG----CGGCC- -5'
6448 5' -60.6 NC_001847.1 + 34528 0.66 0.696234
Target:  5'- -----gCCGGCgaUGC-GCCGcCCGCCGGg -3'
miRNA:   3'- gaagaaGGUCG--GCGuCGGC-GGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 134033 0.66 0.696234
Target:  5'- --gCUggaGGCCGCGGCggCGCCGCCc- -3'
miRNA:   3'- gaaGAaggUCGGCGUCG--GCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 11174 0.66 0.696234
Target:  5'- -gUCggg-AGCUGgGGCUGCCGCUGGu -3'
miRNA:   3'- gaAGaaggUCGGCgUCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 49663 0.66 0.696234
Target:  5'- cCUUC-UCCgcguacacGGCCGUAguucugcucGCCGUCGCCGc -3'
miRNA:   3'- -GAAGaAGG--------UCGGCGU---------CGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 91736 0.66 0.696234
Target:  5'- -----cCCAGCUGCAGCgcccugCGCgCGUCGGc -3'
miRNA:   3'- gaagaaGGUCGGCGUCG------GCG-GCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 21745 0.66 0.696234
Target:  5'- -----gCCGGcCCGCgcgcgcgggggGGCCGCCggcGCCGGg -3'
miRNA:   3'- gaagaaGGUC-GGCG-----------UCGGCGG---CGGCC- -5'
6448 5' -60.6 NC_001847.1 + 31220 0.66 0.696234
Target:  5'- --gCUggaGGCCGCGGCggCGCCGCCc- -3'
miRNA:   3'- gaaGAaggUCGGCGUCG--GCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 60495 0.66 0.696234
Target:  5'- ----cUCCAGgCGCAGCaGCUGCCc- -3'
miRNA:   3'- gaagaAGGUCgGCGUCGgCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 34073 0.66 0.696234
Target:  5'- -----cCCGGCCcccGCGGCgGCC-CCGGg -3'
miRNA:   3'- gaagaaGGUCGG---CGUCGgCGGcGGCC- -5'
6448 5' -60.6 NC_001847.1 + 52668 0.66 0.696234
Target:  5'- cCUUCggcggCCccguGGCCGgGGCCGggcCCGCCGc -3'
miRNA:   3'- -GAAGaa---GG----UCGGCgUCGGC---GGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 7895 0.66 0.696234
Target:  5'- -----cCUAGCCGCgcggggcgcgcGGCgGCCGCCGc -3'
miRNA:   3'- gaagaaGGUCGGCG-----------UCGgCGGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.