miRNA display CGI


Results 21 - 40 of 583 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 5' -60.6 NC_001847.1 + 69649 0.66 0.715752
Target:  5'- -----cCCAGCCGC-GCCGCgacCCGGu -3'
miRNA:   3'- gaagaaGGUCGGCGuCGGCGgc-GGCC- -5'
6448 5' -60.6 NC_001847.1 + 124686 0.66 0.715752
Target:  5'- aUUCgcUCCAGCaaCGCGGCCaggggaGCCGGg -3'
miRNA:   3'- gAAGa-AGGUCG--GCGUCGGcgg---CGGCC- -5'
6448 5' -60.6 NC_001847.1 + 99562 0.66 0.714782
Target:  5'- gUUCUUgagguuggCCAGCCcggcgcccucgucGCGGUCGCgCGCCGc -3'
miRNA:   3'- gAAGAA--------GGUCGG-------------CGUCGGCG-GCGGCc -5'
6448 5' -60.6 NC_001847.1 + 76382 0.66 0.709922
Target:  5'- -cUCUUCaCGGCCucggggggggcgccgGgGGCCGCgGCgGGg -3'
miRNA:   3'- gaAGAAG-GUCGG---------------CgUCGGCGgCGgCC- -5'
6448 5' -60.6 NC_001847.1 + 11570 0.66 0.706023
Target:  5'- ----gUCCGGCCccgcucGCGGCgGCC-CCGGc -3'
miRNA:   3'- gaagaAGGUCGG------CGUCGgCGGcGGCC- -5'
6448 5' -60.6 NC_001847.1 + 50030 0.66 0.706023
Target:  5'- uCUUUgaCCAGCCcgcggggcgcgGUGGCgGCCGCgGGu -3'
miRNA:   3'- -GAAGaaGGUCGG-----------CGUCGgCGGCGgCC- -5'
6448 5' -60.6 NC_001847.1 + 76973 0.66 0.706023
Target:  5'- gCUUUgacgacCCcGCCGCGGUCGCCcGCCu- -3'
miRNA:   3'- -GAAGaa----GGuCGGCGUCGGCGG-CGGcc -5'
6448 5' -60.6 NC_001847.1 + 17841 0.66 0.706023
Target:  5'- -gUCgcCCA-UCGCGGCucgcguugccagCGCCGCCGGg -3'
miRNA:   3'- gaAGaaGGUcGGCGUCG------------GCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 33512 0.66 0.706023
Target:  5'- ------gCGGCgGCGGgCGCCGCCGcGg -3'
miRNA:   3'- gaagaagGUCGgCGUCgGCGGCGGC-C- -5'
6448 5' -60.6 NC_001847.1 + 94171 0.66 0.706023
Target:  5'- --gCUgCUGGgCGCGGCCGCCucGCgCGGg -3'
miRNA:   3'- gaaGAaGGUCgGCGUCGGCGG--CG-GCC- -5'
6448 5' -60.6 NC_001847.1 + 42650 0.66 0.706023
Target:  5'- -gUCgugCCcuuuGUCGaagaGGCCGCCGCCGc -3'
miRNA:   3'- gaAGaa-GGu---CGGCg---UCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 30043 0.66 0.706023
Target:  5'- -----cCCGGCgGCc-CCGCCGCCGa -3'
miRNA:   3'- gaagaaGGUCGgCGucGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 105697 0.66 0.706023
Target:  5'- ----cUUCGGCCGCGGgCGgCGCCa- -3'
miRNA:   3'- gaagaAGGUCGGCGUCgGCgGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 129937 0.66 0.706023
Target:  5'- --gCUUCC-GUCGCGGCgCGCuUGCCGc -3'
miRNA:   3'- gaaGAAGGuCGGCGUCG-GCG-GCGGCc -5'
6448 5' -60.6 NC_001847.1 + 99209 0.66 0.706023
Target:  5'- --gCggCCGcGCgGCGGCgCGCCGCCa- -3'
miRNA:   3'- gaaGaaGGU-CGgCGUCG-GCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 30662 0.66 0.706023
Target:  5'- -----aCUGGCCGCgcgacGGCCcgGCCGUCGGg -3'
miRNA:   3'- gaagaaGGUCGGCG-----UCGG--CGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 97870 0.66 0.706023
Target:  5'- ----cUCCAGUCGaC-GCCGCC-CCGGc -3'
miRNA:   3'- gaagaAGGUCGGC-GuCGGCGGcGGCC- -5'
6448 5' -60.6 NC_001847.1 + 101327 0.66 0.706023
Target:  5'- -gUCUgcgCaCAGCCGCu-CCaGCgCGCCGGg -3'
miRNA:   3'- gaAGAa--G-GUCGGCGucGG-CG-GCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 102252 0.66 0.706023
Target:  5'- gCUUCcccgCCGGCCcccgaGGCCucGCCGUCGGc -3'
miRNA:   3'- -GAAGaa--GGUCGGcg---UCGG--CGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 133475 0.66 0.706023
Target:  5'- -----aCUGGCCGCgcgacGGCCcgGCCGUCGGg -3'
miRNA:   3'- gaagaaGGUCGGCG-----UCGG--CGGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.