miRNA display CGI


Results 21 - 40 of 583 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 5' -60.6 NC_001847.1 + 39063 0.75 0.246514
Target:  5'- ----cUCCGGCucCGCcauuGCCGCCGCCGGc -3'
miRNA:   3'- gaagaAGGUCG--GCGu---CGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 129795 0.75 0.229664
Target:  5'- ----aUCCAGCCGCGGCCGgcuagccagcuCCGaCCGGc -3'
miRNA:   3'- gaagaAGGUCGGCGUCGGC-----------GGC-GGCC- -5'
6448 5' -60.6 NC_001847.1 + 11673 0.77 0.176034
Target:  5'- -----cCCAGCCgagcccgcgGCGGCCGUCGCCGGg -3'
miRNA:   3'- gaagaaGGUCGG---------CGUCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 110011 0.8 0.114945
Target:  5'- --gCUUUaggCAGCCGCGGCCGCCGCCc- -3'
miRNA:   3'- gaaGAAG---GUCGGCGUCGGCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 80450 0.73 0.296456
Target:  5'- -gUCcUCCccgcgggcGCCGCcGCCGCCGUCGGg -3'
miRNA:   3'- gaAGaAGGu-------CGGCGuCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 20019 0.74 0.264376
Target:  5'- --aCUUCCaauagggcGGCCcuGCGGCCGCCGCCcuGGg -3'
miRNA:   3'- gaaGAAGG--------UCGG--CGUCGGCGGCGG--CC- -5'
6448 5' -60.6 NC_001847.1 + 104065 0.75 0.218979
Target:  5'- -----aCCGGCCGCAGCgGCgCGCCGa -3'
miRNA:   3'- gaagaaGGUCGGCGUCGgCG-GCGGCc -5'
6448 5' -60.6 NC_001847.1 + 132055 0.81 0.09606
Target:  5'- --cCUgCCGGCCGCGGCCuGCgCGCCGGa -3'
miRNA:   3'- gaaGAaGGUCGGCGUCGG-CG-GCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 129595 0.74 0.264376
Target:  5'- --gCUgCCGcuGCUGCcGCCGCCGCCGGu -3'
miRNA:   3'- gaaGAaGGU--CGGCGuCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 15621 0.84 0.058543
Target:  5'- --cCUgCCGGCCGCGGCCGCCGCCc- -3'
miRNA:   3'- gaaGAaGGUCGGCGUCGGCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 75707 0.75 0.218979
Target:  5'- -cUCgggCCacgGGCCGCgGGCCGCCGCCGu -3'
miRNA:   3'- gaAGaa-GG---UCGGCG-UCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 38729 0.74 0.252355
Target:  5'- --cCUgccgCCGGCCccGCcauuGCCGCCGCCGGc -3'
miRNA:   3'- gaaGAa---GGUCGG--CGu---CGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 30893 0.76 0.203749
Target:  5'- -gUCgcCCGGCCGCAGCCcggugaggcGCgCGCCGGc -3'
miRNA:   3'- gaAGaaGGUCGGCGUCGG---------CG-GCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 76845 0.77 0.176034
Target:  5'- ----aUCCGGCCuGcCGGCCGCCGCCGu -3'
miRNA:   3'- gaagaAGGUCGG-C-GUCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 130096 0.79 0.137252
Target:  5'- -gUCcgUCCcGUCGgAGCCGCCGCCGGu -3'
miRNA:   3'- gaAGa-AGGuCGGCgUCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 15567 0.79 0.124058
Target:  5'- ----gUCgGGCCGCGGCCGCCGCUGc -3'
miRNA:   3'- gaagaAGgUCGGCGUCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 38840 0.73 0.317116
Target:  5'- -----gCCGGCCccGCcauuGCCGCCGCCGGc -3'
miRNA:   3'- gaagaaGGUCGG--CGu---CGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 38795 0.73 0.310111
Target:  5'- --aCcgCCGGCCccGCcauuGCCGCCGCCGGc -3'
miRNA:   3'- gaaGaaGGUCGG--CGu---CGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 107169 0.74 0.283274
Target:  5'- -----cCCGGCCGCGGCCGCCuCCa- -3'
miRNA:   3'- gaagaaGGUCGGCGUCGGCGGcGGcc -5'
6448 5' -60.6 NC_001847.1 + 107147 0.74 0.276858
Target:  5'- ----cUUCGGCCGCGGCCGCCuCCGc -3'
miRNA:   3'- gaagaAGGUCGGCGUCGGCGGcGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.