miRNA display CGI


Results 21 - 40 of 583 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 5' -60.6 NC_001847.1 + 11673 0.77 0.176034
Target:  5'- -----cCCAGCCgagcccgcgGCGGCCGUCGCCGGg -3'
miRNA:   3'- gaagaaGGUCGG---------CGUCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 76845 0.77 0.176034
Target:  5'- ----aUCCGGCCuGcCGGCCGCCGCCGu -3'
miRNA:   3'- gaagaAGGUCGG-C-GUCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 105332 0.77 0.184427
Target:  5'- cCUUCUUCCuucccucggacccGGCgGCGcucCCGCCGCCGGg -3'
miRNA:   3'- -GAAGAAGG-------------UCGgCGUc--GGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 2519 0.77 0.184427
Target:  5'- cCUUCUUCCuucccucggacccGGCgGCGcucCCGCCGCCGGg -3'
miRNA:   3'- -GAAGAAGG-------------UCGgCGUc--GGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 90234 0.77 0.184878
Target:  5'- ------aCGGUCGCGGCCGCCGCCGcGg -3'
miRNA:   3'- gaagaagGUCGGCGUCGGCGGCGGC-C- -5'
6448 5' -60.6 NC_001847.1 + 112310 0.76 0.189446
Target:  5'- -aUCUUCgacaacuaccuCGGCggggaGCGGCCGCCGCCGGc -3'
miRNA:   3'- gaAGAAG-----------GUCGg----CGUCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 3085 0.76 0.203749
Target:  5'- ----gUCCGGCgCGCAgGCCGCgGCCGGc -3'
miRNA:   3'- gaagaAGGUCG-GCGU-CGGCGgCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 58452 0.76 0.203749
Target:  5'- --aUUUCCAGCCGCAG-CGCCGCgCGc -3'
miRNA:   3'- gaaGAAGGUCGGCGUCgGCGGCG-GCc -5'
6448 5' -60.6 NC_001847.1 + 30893 0.76 0.203749
Target:  5'- -gUCgcCCGGCCGCAGCCcggugaggcGCgCGCCGGc -3'
miRNA:   3'- gaAGaaGGUCGGCGUCGG---------CG-GCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 105898 0.76 0.203749
Target:  5'- ----gUCCGGCgCGCAgGCCGCgGCCGGc -3'
miRNA:   3'- gaagaAGGUCG-GCGU-CGGCGgCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 1252 0.75 0.218979
Target:  5'- -----aCCGGCCGCAGCgGCgCGCCGa -3'
miRNA:   3'- gaagaaGGUCGGCGUCGgCG-GCGGCc -5'
6448 5' -60.6 NC_001847.1 + 119085 0.75 0.218979
Target:  5'- -----cCCAgcagaggcGCCGCGGCCGCCGCgGGg -3'
miRNA:   3'- gaagaaGGU--------CGGCGUCGGCGGCGgCC- -5'
6448 5' -60.6 NC_001847.1 + 119905 0.75 0.218979
Target:  5'- -------uGGCCGCcGCCGCCGCCGGc -3'
miRNA:   3'- gaagaaggUCGGCGuCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 75707 0.75 0.218979
Target:  5'- -cUCgggCCacgGGCCGCgGGCCGCCGCCGu -3'
miRNA:   3'- gaAGaa-GG---UCGGCG-UCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 104065 0.75 0.218979
Target:  5'- -----aCCGGCCGCAGCgGCgCGCCGa -3'
miRNA:   3'- gaagaaGGUCGGCGUCGgCG-GCGGCc -5'
6448 5' -60.6 NC_001847.1 + 74267 0.75 0.229664
Target:  5'- -cUCUUcCCGGgCGCGGCCGCCcucgcGCUGGa -3'
miRNA:   3'- gaAGAA-GGUCgGCGUCGGCGG-----CGGCC- -5'
6448 5' -60.6 NC_001847.1 + 129795 0.75 0.229664
Target:  5'- ----aUCCAGCCGCGGCCGgcuagccagcuCCGaCCGGc -3'
miRNA:   3'- gaagaAGGUCGGCGUCGGC-----------GGC-GGCC- -5'
6448 5' -60.6 NC_001847.1 + 129670 0.75 0.229664
Target:  5'- ------gCGGCCGCuGCCGCCGCCGc -3'
miRNA:   3'- gaagaagGUCGGCGuCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 26982 0.75 0.229664
Target:  5'- ----aUCCAGCCGCGGCCGgcuagccagcuCCGaCCGGc -3'
miRNA:   3'- gaagaAGGUCGGCGUCGGC-----------GGC-GGCC- -5'
6448 5' -60.6 NC_001847.1 + 11345 0.75 0.23517
Target:  5'- -----gCCuGCCGCuGCCGCCGCCGc -3'
miRNA:   3'- gaagaaGGuCGGCGuCGGCGGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.