miRNA display CGI


Results 21 - 40 of 583 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 5' -60.6 NC_001847.1 + 3399 0.67 0.626739
Target:  5'- --gCUUCUGGUCGCAGUCGUagCGgCGGc -3'
miRNA:   3'- gaaGAAGGUCGGCGUCGGCG--GCgGCC- -5'
6448 5' -60.6 NC_001847.1 + 3816 0.7 0.436117
Target:  5'- ------gCGGCgGCGGCgCGCUGCCGGg -3'
miRNA:   3'- gaagaagGUCGgCGUCG-GCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 3871 0.66 0.676511
Target:  5'- ----cUCCAGCgGCGGCggccCGUCGCgCGGc -3'
miRNA:   3'- gaagaAGGUCGgCGUCG----GCGGCG-GCC- -5'
6448 5' -60.6 NC_001847.1 + 4334 0.74 0.276858
Target:  5'- ----cUUCGGCCGCGGCCGCCuCCGc -3'
miRNA:   3'- gaagaAGGUCGGCGUCGGCGGcGGCc -5'
6448 5' -60.6 NC_001847.1 + 4356 0.74 0.283274
Target:  5'- -----cCCGGCCGCGGCCGCCuCCa- -3'
miRNA:   3'- gaagaaGGUCGGCGUCGGCGGcGGcc -5'
6448 5' -60.6 NC_001847.1 + 4384 0.68 0.577054
Target:  5'- -cUCUUCgAcggcGCCaCGGUCGCCGCCGu -3'
miRNA:   3'- gaAGAAGgU----CGGcGUCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 4614 0.66 0.676511
Target:  5'- -cUCggCCAGCucggCGCGGgCGgcCCGCCGGc -3'
miRNA:   3'- gaAGaaGGUCG----GCGUCgGC--GGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 5212 0.72 0.353914
Target:  5'- -cUC-UCUcGCCGCGGCgGCCGgCGGg -3'
miRNA:   3'- gaAGaAGGuCGGCGUCGgCGGCgGCC- -5'
6448 5' -60.6 NC_001847.1 + 5475 0.71 0.393626
Target:  5'- -cUCUgcggCGGCgGCAGCgGCCGCCGc -3'
miRNA:   3'- gaAGAag--GUCGgCGUCGgCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 5685 0.69 0.490408
Target:  5'- -----gCCGGCCGgGGCCGCCcagacCCGGc -3'
miRNA:   3'- gaagaaGGUCGGCgUCGGCGGc----GGCC- -5'
6448 5' -60.6 NC_001847.1 + 6681 0.71 0.410301
Target:  5'- -------aGGCCGCGGCgGCCGgCCGGg -3'
miRNA:   3'- gaagaaggUCGGCGUCGgCGGC-GGCC- -5'
6448 5' -60.6 NC_001847.1 + 7198 0.8 0.114945
Target:  5'- --gCUUUaggCAGCCGCGGCCGCCGCCc- -3'
miRNA:   3'- gaaGAAG---GUCGGCGUCGGCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 7895 0.66 0.696234
Target:  5'- -----cCUAGCCGCgcggggcgcgcGGCgGCCGCCGc -3'
miRNA:   3'- gaagaaGGUCGGCG-----------UCGgCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 8608 0.7 0.444928
Target:  5'- -----gUCAGCCGCAGCgcaaGCCccGCCGGg -3'
miRNA:   3'- gaagaaGGUCGGCGUCGg---CGG--CGGCC- -5'
6448 5' -60.6 NC_001847.1 + 8980 0.71 0.418801
Target:  5'- -aUCUUgCGGuuGUGGCCGCCGCg-- -3'
miRNA:   3'- gaAGAAgGUCggCGUCGGCGGCGgcc -5'
6448 5' -60.6 NC_001847.1 + 9595 0.66 0.676511
Target:  5'- ----aUCgAGCCGCAGCCGCggggaCGaCCGu -3'
miRNA:   3'- gaagaAGgUCGGCGUCGGCG-----GC-GGCc -5'
6448 5' -60.6 NC_001847.1 + 9671 0.75 0.240786
Target:  5'- -cUCgcgCCcGCCGCgAGCUGCCGCCGa -3'
miRNA:   3'- gaAGaa-GGuCGGCG-UCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 9728 0.71 0.393626
Target:  5'- -gUCcUCCGGCggcgccgggGCAGUCGCCGUCGGu -3'
miRNA:   3'- gaAGaAGGUCGg--------CGUCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 9821 0.69 0.490408
Target:  5'- -----aCCGGCC-CGGcCCGCCGCCGc -3'
miRNA:   3'- gaagaaGGUCGGcGUC-GGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 10019 0.66 0.696234
Target:  5'- -cUCUUCC-GCUGCA-UCGCCaCCGGc -3'
miRNA:   3'- gaAGAAGGuCGGCGUcGGCGGcGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.