miRNA display CGI


Results 1 - 20 of 583 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 5' -60.6 NC_001847.1 + 357 0.69 0.481133
Target:  5'- gCUUCgcgccCCGGggcccgccCCGCGcGCCGCgCGCCGGa -3'
miRNA:   3'- -GAAGaa---GGUC--------GGCGU-CGGCG-GCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 740 0.66 0.675521
Target:  5'- --cCUUCCcgcgGGCCccccuagggcgagGcCGGcCCGCCGCCGGc -3'
miRNA:   3'- gaaGAAGG----UCGG-------------C-GUC-GGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 889 0.66 0.656651
Target:  5'- -----cCCGcGCCGgGGCCGCCGCgGc -3'
miRNA:   3'- gaagaaGGU-CGGCgUCGGCGGCGgCc -5'
6448 5' -60.6 NC_001847.1 + 912 0.73 0.324239
Target:  5'- -----gCCGGCCGCcgcccGCCGgCGCCGGg -3'
miRNA:   3'- gaagaaGGUCGGCGu----CGGCgGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 989 0.67 0.636715
Target:  5'- --gCUUCC-GCCGCGGCgGCgGCaCGc -3'
miRNA:   3'- gaaGAAGGuCGGCGUCGgCGgCG-GCc -5'
6448 5' -60.6 NC_001847.1 + 1080 0.69 0.499766
Target:  5'- -gUCccagUCCAcgccgggcGCCGCGGCCGCgGgCGGc -3'
miRNA:   3'- gaAGa---AGGU--------CGGCGUCGGCGgCgGCC- -5'
6448 5' -60.6 NC_001847.1 + 1171 0.67 0.636715
Target:  5'- ------gCGGCCGCGcagaaggccaccGCCGCgGCCGGc -3'
miRNA:   3'- gaagaagGUCGGCGU------------CGGCGgCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 1252 0.75 0.218979
Target:  5'- -----aCCGGCCGCAGCgGCgCGCCGa -3'
miRNA:   3'- gaagaaGGUCGGCGUCGgCG-GCGGCc -5'
6448 5' -60.6 NC_001847.1 + 1692 0.68 0.583972
Target:  5'- gUUCUcgggguccacggcgUCgAGCaCGauCAGCCGCCGCCGc -3'
miRNA:   3'- gAAGA--------------AGgUCG-GC--GUCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 2025 0.66 0.686394
Target:  5'- -gUUUUCCAGCacggCGcCGGCCGUgGCCa- -3'
miRNA:   3'- gaAGAAGGUCG----GC-GUCGGCGgCGGcc -5'
6448 5' -60.6 NC_001847.1 + 2439 0.72 0.346318
Target:  5'- gCUUCgcgCCAGCCGCAGCgaGCUcCCGa -3'
miRNA:   3'- -GAAGaa-GGUCGGCGUCGg-CGGcGGCc -5'
6448 5' -60.6 NC_001847.1 + 2519 0.77 0.184427
Target:  5'- cCUUCUUCCuucccucggacccGGCgGCGcucCCGCCGCCGGg -3'
miRNA:   3'- -GAAGAAGG-------------UCGgCGUc--GGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 2583 0.71 0.399412
Target:  5'- cCUgcgCggCC-GCCGCGGCCGCacgcgagcccgccgCGCCGGa -3'
miRNA:   3'- -GAa--GaaGGuCGGCGUCGGCG--------------GCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 2736 0.67 0.623746
Target:  5'- aCUUCcaCCGGCCcccggcccggcgcgGCGgcGCCGgCGCCGGc -3'
miRNA:   3'- -GAAGaaGGUCGG--------------CGU--CGGCgGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 2817 0.71 0.418801
Target:  5'- -----gCCAGCCGC-GCCGgcaccuCCGCCGGc -3'
miRNA:   3'- gaagaaGGUCGGCGuCGGC------GGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 2969 0.71 0.377398
Target:  5'- -----cUCGGCgCGCAG-CGCCGCCGGg -3'
miRNA:   3'- gaagaaGGUCG-GCGUCgGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 3085 0.76 0.203749
Target:  5'- ----gUCCGGCgCGCAgGCCGCgGCCGGc -3'
miRNA:   3'- gaagaAGGUCG-GCGU-CGGCGgCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 3191 0.68 0.537934
Target:  5'- -cUCUcgCC-GCCGUcGCCGCCaucGCCGGc -3'
miRNA:   3'- gaAGAa-GGuCGGCGuCGGCGG---CGGCC- -5'
6448 5' -60.6 NC_001847.1 + 3208 0.68 0.557396
Target:  5'- -gUCcgCCAGCucgCGCAGCCGCucgcgCGCCGc -3'
miRNA:   3'- gaAGaaGGUCG---GCGUCGGCG-----GCGGCc -5'
6448 5' -60.6 NC_001847.1 + 3314 0.67 0.636715
Target:  5'- --gCggCgCGGgCGCcGCUGCCGCCGGc -3'
miRNA:   3'- gaaGaaG-GUCgGCGuCGGCGGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.