Results 1 - 20 of 583 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6448 | 5' | -60.6 | NC_001847.1 | + | 46200 | 0.86 | 0.039368 |
Target: 5'- --gCggCCGGCgGCGGCCGCCGCCGGg -3' miRNA: 3'- gaaGaaGGUCGgCGUCGGCGGCGGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 104065 | 0.75 | 0.218979 |
Target: 5'- -----aCCGGCCGCAGCgGCgCGCCGa -3' miRNA: 3'- gaagaaGGUCGGCGUCGgCG-GCGGCc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 129795 | 0.75 | 0.229664 |
Target: 5'- ----aUCCAGCCGCGGCCGgcuagccagcuCCGaCCGGc -3' miRNA: 3'- gaagaAGGUCGGCGUCGGC-----------GGC-GGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 130273 | 0.66 | 0.715752 |
Target: 5'- -----cCCuGCCGCuGcCCGCCGCCc- -3' miRNA: 3'- gaagaaGGuCGGCGuC-GGCGGCGGcc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 15567 | 0.79 | 0.124058 |
Target: 5'- ----gUCgGGCCGCGGCCGCCGCUGc -3' miRNA: 3'- gaagaAGgUCGGCGUCGGCGGCGGCc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 113003 | 0.79 | 0.124058 |
Target: 5'- -cUUUUgCGcGCCGCcGCCGCCGCCGGg -3' miRNA: 3'- gaAGAAgGU-CGGCGuCGGCGGCGGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 130096 | 0.79 | 0.137252 |
Target: 5'- -gUCcgUCCcGUCGgAGCCGCCGCCGGu -3' miRNA: 3'- gaAGa-AGGuCGGCgUCGGCGGCGGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 38883 | 0.78 | 0.155552 |
Target: 5'- ---gUUCCGGCCccGCcauuGCCGCCGCCGGc -3' miRNA: 3'- gaagAAGGUCGG--CGu---CGGCGGCGGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 76845 | 0.77 | 0.176034 |
Target: 5'- ----aUCCGGCCuGcCGGCCGCCGCCGu -3' miRNA: 3'- gaagaAGGUCGG-C-GUCGGCGGCGGCc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 119905 | 0.75 | 0.218979 |
Target: 5'- -------uGGCCGCcGCCGCCGCCGGc -3' miRNA: 3'- gaagaaggUCGGCGuCGGCGGCGGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 90234 | 0.77 | 0.184878 |
Target: 5'- ------aCGGUCGCGGCCGCCGCCGcGg -3' miRNA: 3'- gaagaagGUCGGCGUCGGCGGCGGC-C- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 11673 | 0.77 | 0.176034 |
Target: 5'- -----cCCAGCCgagcccgcgGCGGCCGUCGCCGGg -3' miRNA: 3'- gaagaaGGUCGG---------CGUCGGCGGCGGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 15621 | 0.84 | 0.058543 |
Target: 5'- --cCUgCCGGCCGCGGCCGCCGCCc- -3' miRNA: 3'- gaaGAaGGUCGGCGUCGGCGGCGGcc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 30893 | 0.76 | 0.203749 |
Target: 5'- -gUCgcCCGGCCGCAGCCcggugaggcGCgCGCCGGc -3' miRNA: 3'- gaAGaaGGUCGGCGUCGG---------CG-GCGGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 132055 | 0.81 | 0.09606 |
Target: 5'- --cCUgCCGGCCGCGGCCuGCgCGCCGGa -3' miRNA: 3'- gaaGAaGGUCGGCGUCGG-CG-GCGGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 96178 | 0.77 | 0.167568 |
Target: 5'- -----cCCcGCCGCGGCCGCCGCCa- -3' miRNA: 3'- gaagaaGGuCGGCGUCGGCGGCGGcc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 105898 | 0.76 | 0.203749 |
Target: 5'- ----gUCCGGCgCGCAgGCCGCgGCCGGc -3' miRNA: 3'- gaagaAGGUCG-GCGU-CGGCGgCGGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 75707 | 0.75 | 0.218979 |
Target: 5'- -cUCgggCCacgGGCCGCgGGCCGCCGCCGu -3' miRNA: 3'- gaAGaa-GG---UCGGCG-UCGGCGGCGGCc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 110011 | 0.8 | 0.114945 |
Target: 5'- --gCUUUaggCAGCCGCGGCCGCCGCCc- -3' miRNA: 3'- gaaGAAG---GUCGGCGUCGGCGGCGGcc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 34440 | 0.79 | 0.130501 |
Target: 5'- aCUUCgggCCgcggacgaGGCCGCGGUgGCCGCCGGc -3' miRNA: 3'- -GAAGaa-GG--------UCGGCGUCGgCGGCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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