miRNA display CGI


Results 1 - 20 of 583 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 5' -60.6 NC_001847.1 + 54448 1.09 0.001032
Target:  5'- gCUUCUUCCAGCCGCAGCCGCCGCCGGc -3'
miRNA:   3'- -GAAGAAGGUCGGCGUCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 46200 0.86 0.039368
Target:  5'- --gCggCCGGCgGCGGCCGCCGCCGGg -3'
miRNA:   3'- gaaGaaGGUCGgCGUCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 88943 0.84 0.058543
Target:  5'- -----cCCGGCgGCGGCCGCCGCCGGc -3'
miRNA:   3'- gaagaaGGUCGgCGUCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 15621 0.84 0.058543
Target:  5'- --cCUgCCGGCCGCGGCCGCCGCCc- -3'
miRNA:   3'- gaaGAaGGUCGGCGUCGGCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 29242 0.81 0.09606
Target:  5'- --cCUgCCGGCCGCGGCCuGCgCGCCGGa -3'
miRNA:   3'- gaaGAaGGUCGGCGUCGG-CG-GCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 132055 0.81 0.09606
Target:  5'- --cCUgCCGGCCGCGGCCuGCgCGCCGGa -3'
miRNA:   3'- gaaGAaGGUCGGCGUCGG-CG-GCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 110011 0.8 0.114945
Target:  5'- --gCUUUaggCAGCCGCGGCCGCCGCCc- -3'
miRNA:   3'- gaaGAAG---GUCGGCGUCGGCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 7198 0.8 0.114945
Target:  5'- --gCUUUaggCAGCCGCGGCCGCCGCCc- -3'
miRNA:   3'- gaaGAAG---GUCGGCGUCGGCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 10190 0.79 0.124058
Target:  5'- -cUUUUgCGcGCCGCcGCCGCCGCCGGg -3'
miRNA:   3'- gaAGAAgGU-CGGCGuCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 113003 0.79 0.124058
Target:  5'- -cUUUUgCGcGCCGCcGCCGCCGCCGGg -3'
miRNA:   3'- gaAGAAgGU-CGGCGuCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 15567 0.79 0.124058
Target:  5'- ----gUCgGGCCGCGGCCGCCGCUGc -3'
miRNA:   3'- gaagaAGgUCGGCGUCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 34440 0.79 0.130501
Target:  5'- aCUUCgggCCgcggacgaGGCCGCGGUgGCCGCCGGc -3'
miRNA:   3'- -GAAGaa-GG--------UCGGCGUCGgCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 27283 0.79 0.137252
Target:  5'- -gUCcgUCCcGUCGgAGCCGCCGCCGGu -3'
miRNA:   3'- gaAGa-AGGuCGGCgUCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 34693 0.79 0.137252
Target:  5'- --cUUUCgAGCCGCAGUCGCCGCUGu -3'
miRNA:   3'- gaaGAAGgUCGGCGUCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 75772 0.79 0.137252
Target:  5'- uUUUUUgCCGGCCGCcGCCGCUGCCGc -3'
miRNA:   3'- gAAGAA-GGUCGGCGuCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 130096 0.79 0.137252
Target:  5'- -gUCcgUCCcGUCGgAGCCGCCGCCGGu -3'
miRNA:   3'- gaAGa-AGGuCGGCgUCGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 119148 0.78 0.140747
Target:  5'- -cUCgUCgGcGCCGCGGCCGCCGCgGGg -3'
miRNA:   3'- gaAGaAGgU-CGGCGUCGGCGGCGgCC- -5'
6448 5' -60.6 NC_001847.1 + 38883 0.78 0.155552
Target:  5'- ---gUUCCGGCCccGCcauuGCCGCCGCCGGc -3'
miRNA:   3'- gaagAAGGUCGG--CGu---CGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 61413 0.77 0.16633
Target:  5'- -cUCcUCCAGCCggcccucgacgcccGCGGCCgcGCCGCCGGg -3'
miRNA:   3'- gaAGaAGGUCGG--------------CGUCGG--CGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 96178 0.77 0.167568
Target:  5'- -----cCCcGCCGCGGCCGCCGCCa- -3'
miRNA:   3'- gaagaaGGuCGGCGUCGGCGGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.