Results 1 - 20 of 583 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6448 | 5' | -60.6 | NC_001847.1 | + | 130273 | 0.66 | 0.715752 |
Target: 5'- -----cCCuGCCGCuGcCCGCCGCCc- -3' miRNA: 3'- gaagaaGGuCGGCGuC-GGCGGCGGcc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 99562 | 0.66 | 0.714782 |
Target: 5'- gUUCUUgagguuggCCAGCCcggcgcccucgucGCGGUCGCgCGCCGc -3' miRNA: 3'- gAAGAA--------GGUCGG-------------CGUCGGCG-GCGGCc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 30043 | 0.66 | 0.706023 |
Target: 5'- -----cCCGGCgGCc-CCGCCGCCGa -3' miRNA: 3'- gaagaaGGUCGgCGucGGCGGCGGCc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 105697 | 0.66 | 0.706023 |
Target: 5'- ----cUUCGGCCGCGGgCGgCGCCa- -3' miRNA: 3'- gaagaAGGUCGGCGUCgGCgGCGGcc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 101327 | 0.66 | 0.706023 |
Target: 5'- -gUCUgcgCaCAGCCGCu-CCaGCgCGCCGGg -3' miRNA: 3'- gaAGAa--G-GUCGGCGucGG-CG-GCGGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 67076 | 0.66 | 0.706023 |
Target: 5'- gUUCgcCCcGCCGCAgGCgCGCCGCgaGGc -3' miRNA: 3'- gAAGaaGGuCGGCGU-CG-GCGGCGg-CC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 129937 | 0.66 | 0.706023 |
Target: 5'- --gCUUCC-GUCGCGGCgCGCuUGCCGc -3' miRNA: 3'- gaaGAAGGuCGGCGUCG-GCG-GCGGCc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 99209 | 0.66 | 0.706023 |
Target: 5'- --gCggCCGcGCgGCGGCgCGCCGCCa- -3' miRNA: 3'- gaaGaaGGU-CGgCGUCG-GCGGCGGcc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 30662 | 0.66 | 0.706023 |
Target: 5'- -----aCUGGCCGCgcgacGGCCcgGCCGUCGGg -3' miRNA: 3'- gaagaaGGUCGGCG-----UCGG--CGGCGGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 120970 | 0.66 | 0.715752 |
Target: 5'- -----cCCAGCgccgcguaagCGCGGCCGUCGCCc- -3' miRNA: 3'- gaagaaGGUCG----------GCGUCGGCGGCGGcc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 11564 | 0.66 | 0.715752 |
Target: 5'- -----cCCAGCgGguGCgGCUGCCGcGg -3' miRNA: 3'- gaagaaGGUCGgCguCGgCGGCGGC-C- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 69649 | 0.66 | 0.715752 |
Target: 5'- -----cCCAGCCGC-GCCGCgacCCGGu -3' miRNA: 3'- gaagaaGGUCGGCGuCGGCGgc-GGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 50763 | 0.66 | 0.715752 |
Target: 5'- -gUCgcgggUCU-GCCGCGGuCCGCgGCCGc -3' miRNA: 3'- gaAGa----AGGuCGGCGUC-GGCGgCGGCc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 38279 | 0.66 | 0.715752 |
Target: 5'- -----cCCAG-CGCGGaCCGCCGCCc- -3' miRNA: 3'- gaagaaGGUCgGCGUC-GGCGGCGGcc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 35485 | 0.66 | 0.715752 |
Target: 5'- cCUUUggggUCCGGCgCGCguuaugcucGGCgUGCgCGCCGGg -3' miRNA: 3'- -GAAGa---AGGUCG-GCG---------UCG-GCG-GCGGCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 27460 | 0.66 | 0.715752 |
Target: 5'- -----cCCuGCCGCuGcCCGCCGCCc- -3' miRNA: 3'- gaagaaGGuCGGCGuC-GGCGGCGGcc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 108236 | 0.66 | 0.715752 |
Target: 5'- gCUUCUacgCCuGCCuGCAGgccaugauCCGCUGCCGc -3' miRNA: 3'- -GAAGAa--GGuCGG-CGUC--------GGCGGCGGCc -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 103726 | 0.66 | 0.715752 |
Target: 5'- ----gUCC-GCCGCGGCUGCCagaCGGc -3' miRNA: 3'- gaagaAGGuCGGCGUCGGCGGcg-GCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 99778 | 0.66 | 0.715752 |
Target: 5'- ----cUCCAGCUGC-GCCaGCgCGCuCGGa -3' miRNA: 3'- gaagaAGGUCGGCGuCGG-CG-GCG-GCC- -5' |
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6448 | 5' | -60.6 | NC_001847.1 | + | 98315 | 0.66 | 0.715752 |
Target: 5'- -gUCcgCCAGCCccCAGUCgGCgCGCCGGu -3' miRNA: 3'- gaAGaaGGUCGGc-GUCGG-CG-GCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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