miRNA display CGI


Results 1 - 20 of 583 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 5' -60.6 NC_001847.1 + 134704 0.69 0.481133
Target:  5'- -----gCC-GCCGCugcuGCCGCCGCCGc -3'
miRNA:   3'- gaagaaGGuCGGCGu---CGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 134683 0.72 0.33148
Target:  5'- --gCUgCC-GCCGCcGCCGCCGCCGc -3'
miRNA:   3'- gaaGAaGGuCGGCGuCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 134660 0.71 0.410301
Target:  5'- ------gCGGCCGCcccGCCGCCGCCGc -3'
miRNA:   3'- gaagaagGUCGGCGu--CGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 134255 0.69 0.494141
Target:  5'- ------gCGGCCGCggcggccccggcgcgGGCCGCCGCCGc -3'
miRNA:   3'- gaagaagGUCGGCG---------------UCGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 134140 0.67 0.616766
Target:  5'- ------gCGGCCugguggagcGCGuGCCGCCGCCGGc -3'
miRNA:   3'- gaagaagGUCGG---------CGU-CGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 134112 0.66 0.666594
Target:  5'- -cUCgUgCuGCUGCGGCgCGCCGCgGGc -3'
miRNA:   3'- gaAGaAgGuCGGCGUCG-GCGGCGgCC- -5'
6448 5' -60.6 NC_001847.1 + 134033 0.66 0.696234
Target:  5'- --gCUggaGGCCGCGGCggCGCCGCCc- -3'
miRNA:   3'- gaaGAaggUCGGCGUCG--GCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 133981 0.73 0.310111
Target:  5'- cCUUCUgCgCGGCCGCgcugccggAGCCGCgCGCCGa -3'
miRNA:   3'- -GAAGAaG-GUCGGCG--------UCGGCG-GCGGCc -5'
6448 5' -60.6 NC_001847.1 + 133475 0.66 0.706023
Target:  5'- -----aCUGGCCGCgcgacGGCCcgGCCGUCGGg -3'
miRNA:   3'- gaagaaGGUCGGCG-----UCGG--CGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 132881 0.69 0.481133
Target:  5'- --gCUUCC-GCCGCGuGCCGCC-CgGGg -3'
miRNA:   3'- gaaGAAGGuCGGCGU-CGGCGGcGgCC- -5'
6448 5' -60.6 NC_001847.1 + 132856 0.66 0.706023
Target:  5'- -----cCCGGCgGCc-CCGCCGCCGa -3'
miRNA:   3'- gaagaaGGUCGgCGucGGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 132756 0.68 0.541808
Target:  5'- -cUCUgggCCgaggcgccggcgaaaAGCCGCcGCCGCCgacgcgGCCGGg -3'
miRNA:   3'- gaAGAa--GG---------------UCGGCGuCGGCGG------CGGCC- -5'
6448 5' -60.6 NC_001847.1 + 132713 0.66 0.676511
Target:  5'- ------gCGGCCcugcCGGCCGCCGCgGGg -3'
miRNA:   3'- gaagaagGUCGGc---GUCGGCGGCGgCC- -5'
6448 5' -60.6 NC_001847.1 + 132663 0.67 0.616766
Target:  5'- -gUCUUCacaCGGCgGCGggggcGCCGCCGCCc- -3'
miRNA:   3'- gaAGAAG---GUCGgCGU-----CGGCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 132602 0.71 0.377398
Target:  5'- -----cCCGGCCcgGCGGCgggagCGCCGCCGGg -3'
miRNA:   3'- gaagaaGGUCGG--CGUCG-----GCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 132557 0.71 0.418801
Target:  5'- -cUCgcgUgCGGCCGCGGCgGCCGCgcaGGc -3'
miRNA:   3'- gaAGa--AgGUCGGCGUCGgCGGCGg--CC- -5'
6448 5' -60.6 NC_001847.1 + 132473 0.66 0.676511
Target:  5'- -----aCgAGCCGaugcCGGCCgaGCCGCCGGg -3'
miRNA:   3'- gaagaaGgUCGGC----GUCGG--CGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 132346 0.7 0.45743
Target:  5'- --gCUggCGGCCGCgcucgcggcccuggaGGCCGCCGgCGGg -3'
miRNA:   3'- gaaGAagGUCGGCG---------------UCGGCGGCgGCC- -5'
6448 5' -60.6 NC_001847.1 + 132164 0.7 0.453839
Target:  5'- ----cUCCAGCgCGCGGCC-CCGgCGGc -3'
miRNA:   3'- gaagaAGGUCG-GCGUCGGcGGCgGCC- -5'
6448 5' -60.6 NC_001847.1 + 132055 0.81 0.09606
Target:  5'- --cCUgCCGGCCGCGGCCuGCgCGCCGGa -3'
miRNA:   3'- gaaGAaGGUCGGCGUCGG-CG-GCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.