miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6455 5' -54.3 NC_001847.1 + 15396 0.66 0.944215
Target:  5'- gUCGGGGCUGggG-CC----GGGUuucGGCu -3'
miRNA:   3'- -AGCUCCGACuuCaGGaguuUCCG---CCG- -5'
6455 5' -54.3 NC_001847.1 + 77672 0.66 0.944215
Target:  5'- cCGAGGUacugcUGGccgAGcgCUUC-AAGGCGGCg -3'
miRNA:   3'- aGCUCCG-----ACU---UCa-GGAGuUUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 74247 0.66 0.944215
Target:  5'- cCGAGGUgGAGGUCacgCAAcucuucccgGGcGCGGCc -3'
miRNA:   3'- aGCUCCGaCUUCAGga-GUU---------UC-CGCCG- -5'
6455 5' -54.3 NC_001847.1 + 86359 0.66 0.944215
Target:  5'- gCGAGGCg-----CCcgCAgacGAGGCGGCg -3'
miRNA:   3'- aGCUCCGacuucaGGa-GU---UUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 50124 0.66 0.939522
Target:  5'- gCGccGGCUGg---CCUCGGugauGGCGGCg -3'
miRNA:   3'- aGCu-CCGACuucaGGAGUUu---CCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 29460 0.66 0.939522
Target:  5'- cCGcGGCcGAAGcgCCgcccgCGgccGAGGCGGCa -3'
miRNA:   3'- aGCuCCGaCUUCa-GGa----GU---UUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 18211 0.66 0.939522
Target:  5'- cUCG-GGCUGGcGGUCuCUC---GGCGGUc -3'
miRNA:   3'- -AGCuCCGACU-UCAG-GAGuuuCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 43091 0.66 0.939522
Target:  5'- cUCGGcGGCgGAGGcgCC-CGGAGGCgccGGCg -3'
miRNA:   3'- -AGCU-CCGaCUUCa-GGaGUUUCCG---CCG- -5'
6455 5' -54.3 NC_001847.1 + 42740 0.66 0.939522
Target:  5'- uUCG-GGCUGgcGcCCcCcuGGGUGGCc -3'
miRNA:   3'- -AGCuCCGACuuCaGGaGuuUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 95089 0.66 0.939522
Target:  5'- aCGAGGCUcaaGAagcuGGUUUUCGGAuucaGCGGCa -3'
miRNA:   3'- aGCUCCGA---CU----UCAGGAGUUUc---CGCCG- -5'
6455 5' -54.3 NC_001847.1 + 53416 0.66 0.939522
Target:  5'- aUGGGGCUGGAGggcgcgugCCgcuucCAccGGCGcGCg -3'
miRNA:   3'- aGCUCCGACUUCa-------GGa----GUuuCCGC-CG- -5'
6455 5' -54.3 NC_001847.1 + 47742 0.66 0.935088
Target:  5'- gCGGGGCcccgcccgcgcgcaaGuacuuGUCCgCGAAGGCGGCc -3'
miRNA:   3'- aGCUCCGa--------------Cuu---CAGGaGUUUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 53860 0.66 0.934582
Target:  5'- gCGGcGCUGgcGgcgCCgaccgccgCGGGGGCGGCg -3'
miRNA:   3'- aGCUcCGACuuCa--GGa-------GUUUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 984 0.66 0.934582
Target:  5'- gCGGGGCU----UCCgccgCGgcGGCGGCa -3'
miRNA:   3'- aGCUCCGAcuucAGGa---GUuuCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 100807 0.66 0.934582
Target:  5'- cCGGGGUUGccauugcGGccgaCCUCGGcccGGGCGGCu -3'
miRNA:   3'- aGCUCCGACu------UCa---GGAGUU---UCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 113762 0.66 0.934582
Target:  5'- aUCGucGCUGAgAG-CCgcccGAGGCGGCc -3'
miRNA:   3'- -AGCucCGACU-UCaGGagu-UUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 96927 0.66 0.934582
Target:  5'- -aGAGGCgcgcGGcccGGgCCUCcgcGGGCGGCa -3'
miRNA:   3'- agCUCCGa---CU---UCaGGAGuu-UCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 53760 0.66 0.929395
Target:  5'- cCGGcGGCccGAGG-CggCGAGGGCGGCa -3'
miRNA:   3'- aGCU-CCGa-CUUCaGgaGUUUCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 97459 0.66 0.929395
Target:  5'- aCGAGGUccagcgcguUGAcGGUcugcaCCUCGcuGGGCGGCu -3'
miRNA:   3'- aGCUCCG---------ACU-UCA-----GGAGUu-UCCGCCG- -5'
6455 5' -54.3 NC_001847.1 + 87580 0.66 0.929395
Target:  5'- gCGAGGUgcccGUgCUCAccGAGGcCGGCg -3'
miRNA:   3'- aGCUCCGacuuCAgGAGU--UUCC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.