miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6456 5' -69 NC_001847.1 + 6962 0.66 0.344987
Target:  5'- cCGCccuGCCgCCGCCCCCUgCCauaGCUUg -3'
miRNA:   3'- aGUG---UGGgGGCGGGGGGgGGgg-CGAG- -5'
6456 5' -69 NC_001847.1 + 88230 0.66 0.344987
Target:  5'- cCGgGCCCgaCGCgCCCCCCgaagCCUCGCUg -3'
miRNA:   3'- aGUgUGGGg-GCG-GGGGGG----GGGGCGAg -5'
6456 5' -69 NC_001847.1 + 134687 0.66 0.344987
Target:  5'- cCGcCGCCgCCGCCgCCgCCgCCGCUg -3'
miRNA:   3'- aGU-GUGGgGGCGGgGGgGGgGGCGAg -5'
6456 5' -69 NC_001847.1 + 105461 0.66 0.344987
Target:  5'- uUCGuCcUCCCCGUCCUCCCCguccUCCGcCUCg -3'
miRNA:   3'- -AGU-GuGGGGGCGGGGGGGG----GGGC-GAG- -5'
6456 5' -69 NC_001847.1 + 61389 0.66 0.344987
Target:  5'- cCGCGCCgCCGCCCggcgcuuggaaCUgCCCUCGCg- -3'
miRNA:   3'- aGUGUGGgGGCGGG-----------GGgGGGGGCGag -5'
6456 5' -69 NC_001847.1 + 97992 0.66 0.344987
Target:  5'- cCGCuuCCCgGCCgCCCCaaaggCCCGCUg -3'
miRNA:   3'- aGUGugGGGgCGGgGGGGg----GGGCGAg -5'
6456 5' -69 NC_001847.1 + 125911 0.66 0.344987
Target:  5'- gUCAauCAgCCCCGCCCCCgcgacuCCUuuuuauugggCCCGCUg -3'
miRNA:   3'- -AGU--GUgGGGGCGGGGG------GGG----------GGGCGAg -5'
6456 5' -69 NC_001847.1 + 2648 0.66 0.344987
Target:  5'- uUCGuCcUCCCCGUCCUCCCCguccUCCGcCUCg -3'
miRNA:   3'- -AGU-GuGGGGGCGGGGGGGG----GGGC-GAG- -5'
6456 5' -69 NC_001847.1 + 15487 0.66 0.344987
Target:  5'- --cCGCCgUUGCCCUCCCgCCCgGCUg -3'
miRNA:   3'- aguGUGGgGGCGGGGGGG-GGGgCGAg -5'
6456 5' -69 NC_001847.1 + 72662 0.66 0.344987
Target:  5'- cCGCgGCCgCCCGCCggcgaCCCCggCCCUGCUg -3'
miRNA:   3'- aGUG-UGG-GGGCGGg----GGGG--GGGGCGAg -5'
6456 5' -69 NC_001847.1 + 109401 0.66 0.344987
Target:  5'- cCGUGCCgCCGCCgCCCgCCgCCGCUUc -3'
miRNA:   3'- aGUGUGGgGGCGGgGGGgGG-GGCGAG- -5'
6456 5' -69 NC_001847.1 + 31874 0.66 0.344987
Target:  5'- cCGcCGCCgCCGCCgCCgCCgCCGCUg -3'
miRNA:   3'- aGU-GUGGgGGCGGgGGgGGgGGCGAg -5'
6456 5' -69 NC_001847.1 + 114352 0.66 0.337897
Target:  5'- -aGCACCCgCCGCgaugcugcagCCCCCCUCGCa- -3'
miRNA:   3'- agUGUGGG-GGCGgg--------GGGGGGGGCGag -5'
6456 5' -69 NC_001847.1 + 122834 0.66 0.337897
Target:  5'- gCGCGCCCaCCggGCCCgCgCCCUgGCUUg -3'
miRNA:   3'- aGUGUGGG-GG--CGGGgGgGGGGgCGAG- -5'
6456 5' -69 NC_001847.1 + 33014 0.66 0.337897
Target:  5'- gUCGCGCggagUgCCGCCgCCCUCUCCGC-Cg -3'
miRNA:   3'- -AGUGUG----GgGGCGGgGGGGGGGGCGaG- -5'
6456 5' -69 NC_001847.1 + 12688 0.66 0.337897
Target:  5'- gUACGCCCCUGCCCagCCUCagguagaggugCCGCUg -3'
miRNA:   3'- aGUGUGGGGGCGGGggGGGG-----------GGCGAg -5'
6456 5' -69 NC_001847.1 + 102002 0.66 0.337897
Target:  5'- -aGCGCCCUCGaCCCaCUCCaccaCCCGC-Cg -3'
miRNA:   3'- agUGUGGGGGC-GGG-GGGGg---GGGCGaG- -5'
6456 5' -69 NC_001847.1 + 23846 0.66 0.330913
Target:  5'- -aGgGgCCCCGCCCCCggccgagcgccgCCCCCgGCcCg -3'
miRNA:   3'- agUgUgGGGGCGGGGG------------GGGGGgCGaG- -5'
6456 5' -69 NC_001847.1 + 32175 0.66 0.330913
Target:  5'- aCGCagaACCCCgGCCCCCCggCCggggcccgaggCCCGCg- -3'
miRNA:   3'- aGUG---UGGGGgCGGGGGG--GG-----------GGGCGag -5'
6456 5' -69 NC_001847.1 + 6367 0.66 0.330913
Target:  5'- nCugACCgCCCGCggCCCCCuuuggCCCuagCCGCUCc -3'
miRNA:   3'- aGugUGG-GGGCG--GGGGG-----GGG---GGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.