miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 19265 0.66 0.488796
Target:  5'- gCGCgaGCCGGcGGcgCAGCgucugugcgGcGGGCCgCCa -3'
miRNA:   3'- -GCGg-CGGCC-CCaaGUCGa--------C-CCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 81229 0.66 0.488796
Target:  5'- uCGCCGUcgccuccgggCGGGGccgUC-GCgaggacggGGGGCCCg -3'
miRNA:   3'- -GCGGCG----------GCCCCa--AGuCGa-------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 115728 0.66 0.488796
Target:  5'- uGCCGCCacGGGcgC-GCUGGuGGCCa- -3'
miRNA:   3'- gCGGCGGc-CCCaaGuCGACC-CCGGgg -5'
6461 5' -65.6 NC_001847.1 + 122204 0.66 0.488796
Target:  5'- cCGCCacacuaGCCGGGGccgGGUgcccucaGGGGCgCCCa -3'
miRNA:   3'- -GCGG------CGGCCCCaagUCGa------CCCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 57398 0.66 0.488796
Target:  5'- -aCCGCUGGGGUaggUCcgGGC--GGGCCUCg -3'
miRNA:   3'- gcGGCGGCCCCA---AG--UCGacCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 58731 0.66 0.488796
Target:  5'- cCGCCG-CGGGGUgcccccgccgCGGCccccGGcGCCCCc -3'
miRNA:   3'- -GCGGCgGCCCCAa---------GUCGa---CCcCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 40172 0.66 0.488796
Target:  5'- aGCCGCgGGGGcugcgcgCGGC-GGaacGGCCgCCg -3'
miRNA:   3'- gCGGCGgCCCCaa-----GUCGaCC---CCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 49813 0.66 0.488796
Target:  5'- uGCUGCUGGGcg-C-GCUGGcGGCCUg -3'
miRNA:   3'- gCGGCGGCCCcaaGuCGACC-CCGGGg -5'
6461 5' -65.6 NC_001847.1 + 16059 0.66 0.488796
Target:  5'- gGCgGCCGcGGcGccUCuGCUGGGcGCCuCCa -3'
miRNA:   3'- gCGgCGGC-CC-Ca-AGuCGACCC-CGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 34088 0.66 0.488796
Target:  5'- gGCC-CCGGGGccggccUCGGCgggugcgcaaauUGGGaCCCCg -3'
miRNA:   3'- gCGGcGGCCCCa-----AGUCG------------ACCCcGGGG- -5'
6461 5' -65.6 NC_001847.1 + 52119 0.66 0.488796
Target:  5'- aGCgGCCGcGGGc-CGGC-GGcGCCCCa -3'
miRNA:   3'- gCGgCGGC-CCCaaGUCGaCCcCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 129150 0.66 0.488796
Target:  5'- gGUCGCCGuuGUUCGGCUGcc-CCCCg -3'
miRNA:   3'- gCGGCGGCccCAAGUCGACcccGGGG- -5'
6461 5' -65.6 NC_001847.1 + 16617 0.66 0.487897
Target:  5'- gCGUgGUCuuuggggGGGGgcgcggCGGCUuugccgucGGGGCCCCg -3'
miRNA:   3'- -GCGgCGG-------CCCCaa----GUCGA--------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 56868 0.66 0.479841
Target:  5'- gGCgGCCcGGGcgCGGCcacGGGCCCg -3'
miRNA:   3'- gCGgCGGcCCCaaGUCGac-CCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 30813 0.66 0.479841
Target:  5'- uGCCGCCGcGGcaaacaCGGCggcGGGGCCg- -3'
miRNA:   3'- gCGGCGGC-CCcaa---GUCGa--CCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 64455 0.66 0.479841
Target:  5'- cCGCCGCCGcccgcggCGGCgcggGGGGCCg- -3'
miRNA:   3'- -GCGGCGGCcccaa--GUCGa---CCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 125907 0.66 0.479841
Target:  5'- gGCUggGCUGGGGUgggcUgGGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCA----AgUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 69459 0.66 0.479841
Target:  5'- gCGCgCGCgCGGcGG--CGGC-GGGGCUCCu -3'
miRNA:   3'- -GCG-GCG-GCC-CCaaGUCGaCCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 115934 0.66 0.479841
Target:  5'- uGCCGUCGGGaacgagcaGGgaGGGGUCgCCg -3'
miRNA:   3'- gCGGCGGCCCcaag----UCgaCCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 43601 0.66 0.479841
Target:  5'- uGgCGCUGGGGccgguGCUGGccacGGCCCUc -3'
miRNA:   3'- gCgGCGGCCCCaagu-CGACC----CCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.