miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 35185 0.66 0.462178
Target:  5'- aCGCgGCCuucgaGGaGGagcgcgcgCGGCUGGGcGCCCUg -3'
miRNA:   3'- -GCGgCGG-----CC-CCaa------GUCGACCC-CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 125997 0.66 0.43974
Target:  5'- gGCUggGCUGGGGUg-GGCUGGgcuaaccuugcggcaGGUCCCu -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACC---------------CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 56868 0.66 0.479841
Target:  5'- gGCgGCCcGGGcgCGGCcacGGGCCCg -3'
miRNA:   3'- gCGgCGGcCCCaaGUCGac-CCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 115934 0.66 0.479841
Target:  5'- uGCCGUCGGGaacgagcaGGgaGGGGUCgCCg -3'
miRNA:   3'- gCGGCGGCCCcaag----UCgaCCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 46214 0.66 0.448297
Target:  5'- cCGCCGCCGGGc--CGGCcgcgGGGaaaucucgcaccaguGCCUCg -3'
miRNA:   3'- -GCGGCGGCCCcaaGUCGa---CCC---------------CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 11196 0.66 0.462178
Target:  5'- gGuCCGCgCGGGGcuggUCgaGGUugaagUGGGGCCUCu -3'
miRNA:   3'- gC-GGCG-GCCCCa---AG--UCG-----ACCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 15073 0.66 0.469203
Target:  5'- gGCgGcCCGGGGaucgccugcggCAGC-GGGGCCgCg -3'
miRNA:   3'- gCGgC-GGCCCCaa---------GUCGaCCCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 92676 0.66 0.453475
Target:  5'- gCGCCGCCccaccagcaccuucaGGGGgacgguguuaagCAGCUGGcagaGCCUCg -3'
miRNA:   3'- -GCGGCGG---------------CCCCaa----------GUCGACCc---CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 83240 0.66 0.442297
Target:  5'- cCGCgGCCGGGGcggcggccgaaagcgCGGCgGGGGCg-- -3'
miRNA:   3'- -GCGgCGGCCCCaa-------------GUCGaCCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 20073 0.66 0.435496
Target:  5'- uCGCUGCCugcgcucGGGGcgagcgcCAGCUGGagcucuGCCCCg -3'
miRNA:   3'- -GCGGCGG-------CCCCaa-----GUCGACCc-----CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 78284 0.66 0.444007
Target:  5'- uGCuCGCCucugcgaGGcGGUgcucgggCGGCUGGGccGCCCCc -3'
miRNA:   3'- gCG-GCGG-------CC-CCAa------GUCGACCC--CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 127139 0.66 0.462178
Target:  5'- uGcCCGCgCGGGGgcgaugUCcaAGUggagggGGGGCCCg -3'
miRNA:   3'- gC-GGCG-GCCCCa-----AG--UCGa-----CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 41816 0.66 0.470968
Target:  5'- -aCCGCgCGGGcGggCGGC-GcGGGUCCCa -3'
miRNA:   3'- gcGGCG-GCCC-CaaGUCGaC-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 37584 0.66 0.436343
Target:  5'- gGCCGCUGcGGcugCGGCggccgGGGGCcggCCCg -3'
miRNA:   3'- gCGGCGGCcCCaa-GUCGa----CCCCG---GGG- -5'
6461 5' -65.6 NC_001847.1 + 21503 0.66 0.470968
Target:  5'- -uUUGCCGGGcGcgccUCGGCgGGGGCCgCg -3'
miRNA:   3'- gcGGCGGCCC-Ca---AGUCGaCCCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 30813 0.66 0.479841
Target:  5'- uGCCGCCGcGGcaaacaCGGCggcGGGGCCg- -3'
miRNA:   3'- gCGGCGGC-CCcaa---GUCGa--CCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 100647 0.66 0.443151
Target:  5'- gCGgCGCCaGGGccgcgcugcugCGGCggGGGGUCCCc -3'
miRNA:   3'- -GCgGCGGcCCCaa---------GUCGa-CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 43601 0.66 0.479841
Target:  5'- uGgCGCUGGGGccgguGCUGGccacGGCCCUc -3'
miRNA:   3'- gCgGCGGCCCCaagu-CGACC----CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 108595 0.66 0.462178
Target:  5'- gGCUGUCGGGGcUCauuugcaugaaAGCaUGGccgaacgcccccGGCCCCg -3'
miRNA:   3'- gCGGCGGCCCCaAG-----------UCG-ACC------------CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 47896 0.66 0.444863
Target:  5'- cCGCgCGCCGGGGcgCAGCcGGuaCCagCCg -3'
miRNA:   3'- -GCG-GCGGCCCCaaGUCGaCCccGG--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.