miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 45865 1.1 0.000293
Target:  5'- uCGCCGCCGGGGUUCAGCUGGGGCCCCa -3'
miRNA:   3'- -GCGGCGGCCCCAAGUCGACCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 123474 0.9 0.009547
Target:  5'- gGCCGCCGcGGGcUCGGCUGGGGCCgCCg -3'
miRNA:   3'- gCGGCGGC-CCCaAGUCGACCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 70692 0.82 0.039762
Target:  5'- gCGCCGCCGcGGGcggCGGCgGGGGCgCCCg -3'
miRNA:   3'- -GCGGCGGC-CCCaa-GUCGaCCCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 4966 0.82 0.040797
Target:  5'- gCGCgCGCCGGGGgggCAGCUGGGGUgCg -3'
miRNA:   3'- -GCG-GCGGCCCCaa-GUCGACCCCGgGg -5'
6461 5' -65.6 NC_001847.1 + 107777 0.8 0.050076
Target:  5'- uCGCgCGCCcgGGGGggCAGCUGGGGCUgCg -3'
miRNA:   3'- -GCG-GCGG--CCCCaaGUCGACCCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 102969 0.79 0.067608
Target:  5'- gGCCgggggGCCGGGGUUCuGCgucuuggcccccGGGGCCCCc -3'
miRNA:   3'- gCGG-----CGGCCCCAAGuCGa-----------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 156 0.79 0.067608
Target:  5'- gGCCgggggGCCGGGGUUCuGCgucuuggcccccGGGGCCCCc -3'
miRNA:   3'- gCGG-----CGGCCCCAAGuCGa-----------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 79537 0.78 0.069692
Target:  5'- uCGCCGUCGGGGccgggggGGCUGGGGCUCg -3'
miRNA:   3'- -GCGGCGGCCCCaag----UCGACCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 111281 0.78 0.077094
Target:  5'- gCGCCggGCCGGGGgcggcgcUCGGCcgggggcGGGGCCCCu -3'
miRNA:   3'- -GCGG--CGGCCCCa------AGUCGa------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 8468 0.78 0.077094
Target:  5'- gCGCCggGCCGGGGgcggcgcUCGGCcgggggcGGGGCCCCu -3'
miRNA:   3'- -GCGG--CGGCCCCa------AGUCGa------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 76401 0.78 0.073303
Target:  5'- gGgCGCCGGGGgccgCGGCgGGGGCaCCCc -3'
miRNA:   3'- gCgGCGGCCCCaa--GUCGaCCCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 32131 0.77 0.089623
Target:  5'- gGgCGCCGGGGgcgggGGCgggggcgGGGGCCCCg -3'
miRNA:   3'- gCgGCGGCCCCaag--UCGa------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 42975 0.77 0.083134
Target:  5'- gGCCGCCGGccggcccgGGUUC-GCUGucggcGGGCCCCg -3'
miRNA:   3'- gCGGCGGCC--------CCAAGuCGAC-----CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 134944 0.77 0.089623
Target:  5'- gGgCGCCGGGGgcgggGGCgggggcgGGGGCCCCg -3'
miRNA:   3'- gCgGCGGCCCCaag--UCGa------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 108083 0.76 0.106683
Target:  5'- uGCCGcCCGGGG---GGCUGcGGGCCUCu -3'
miRNA:   3'- gCGGC-GGCCCCaagUCGAC-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 130232 0.76 0.111816
Target:  5'- uGCCGCCGGcgcggucGGUgucguucgCAGCggcgcgGGGGCCCUg -3'
miRNA:   3'- gCGGCGGCC-------CCAa-------GUCGa-----CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 35622 0.76 0.104071
Target:  5'- cCGCCGCCGGcGGc---GCUGGGGCCa- -3'
miRNA:   3'- -GCGGCGGCC-CCaaguCGACCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 125697 0.76 0.099027
Target:  5'- uCGCCGCCGGGGUUCugcaagagcauGGCUGggcuGGGCUg- -3'
miRNA:   3'- -GCGGCGGCCCCAAG-----------UCGAC----CCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 43001 0.76 0.099027
Target:  5'- aCGCCGCCGGGGg--GGCgcgccGGGCCgCCg -3'
miRNA:   3'- -GCGGCGGCCCCaagUCGac---CCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 27419 0.76 0.111816
Target:  5'- uGCCGCCGGcgcggucGGUgucguucgCAGCggcgcgGGGGCCCUg -3'
miRNA:   3'- gCGGCGGCC-------CCAa-------GUCGa-----CCCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.