miRNA display CGI


Results 1 - 20 of 257 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 156 0.79 0.067608
Target:  5'- gGCCgggggGCCGGGGUUCuGCgucuuggcccccGGGGCCCCc -3'
miRNA:   3'- gCGG-----CGGCCCCAAGuCGa-----------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 2063 0.7 0.263285
Target:  5'- gCGCCGCCGcagcGGUggCGGCgagcgccccgcGGGGCCCg -3'
miRNA:   3'- -GCGGCGGCc---CCAa-GUCGa----------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 2302 0.75 0.114893
Target:  5'- gGCCGCCGGG---CGGCauGGGCCCCa -3'
miRNA:   3'- gCGGCGGCCCcaaGUCGacCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 2551 0.67 0.411359
Target:  5'- cCGCCGCCGGGc--CGG--GGcGGCCCUc -3'
miRNA:   3'- -GCGGCGGCCCcaaGUCgaCC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 2980 0.73 0.165446
Target:  5'- gCGCCGCCGGGGccggcGCUGGaGCCgCg -3'
miRNA:   3'- -GCGGCGGCCCCaagu-CGACCcCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 3149 0.67 0.427917
Target:  5'- gCGgCGCCGGcGGcgCGGC--GGGCCgCCu -3'
miRNA:   3'- -GCgGCGGCC-CCaaGUCGacCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 3827 0.67 0.378689
Target:  5'- gCGCUGCCGGGccacgccucgccaGaaggcgUCAGCaGcGGGCCCUc -3'
miRNA:   3'- -GCGGCGGCCC-------------Ca-----AGUCGaC-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 3979 0.69 0.327772
Target:  5'- gGgCGCCGGGGgccgggcgcgCGGCcccgcGGGGCgCCg -3'
miRNA:   3'- gCgGCGGCCCCaa--------GUCGa----CCCCGgGG- -5'
6461 5' -65.6 NC_001847.1 + 4966 0.82 0.040797
Target:  5'- gCGCgCGCCGGGGgggCAGCUGGGGUgCg -3'
miRNA:   3'- -GCG-GCGGCCCCaa-GUCGACCCCGgGg -5'
6461 5' -65.6 NC_001847.1 + 5782 0.66 0.462178
Target:  5'- gGCUGUCGGGGcUCauuugcaugaaAGCaUGGccgaacgcccccGGCCCCg -3'
miRNA:   3'- gCGGCGGCCCCaAG-----------UCG-ACC------------CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 7774 0.67 0.40323
Target:  5'- gGCCGuuGGuGccgaGGCUcGGGCCCCg -3'
miRNA:   3'- gCGGCggCC-CcaagUCGAcCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 7898 0.68 0.364151
Target:  5'- aGCCGCgCGGGGcgC-GC-GGcGGCCgCCg -3'
miRNA:   3'- gCGGCG-GCCCCaaGuCGaCC-CCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 8468 0.78 0.077094
Target:  5'- gCGCCggGCCGGGGgcggcgcUCGGCcgggggcGGGGCCCCu -3'
miRNA:   3'- -GCGG--CGGCCCCa------AGUCGa------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 8626 0.68 0.34927
Target:  5'- -cCCGCCGGGGgagCGGCcGcugcggacucGGGCgCCCa -3'
miRNA:   3'- gcGGCGGCCCCaa-GUCGaC----------CCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 9811 0.73 0.177708
Target:  5'- gGCCGCUGGcGUUCAGCgc-GGCUCCg -3'
miRNA:   3'- gCGGCGGCCcCAAGUCGaccCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 10206 0.67 0.379465
Target:  5'- cCGCCGCCGGGcccaGggCGcgcccGCUGucGCCCCc -3'
miRNA:   3'- -GCGGCGGCCC----CaaGU-----CGACccCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 10563 0.7 0.263285
Target:  5'- cCGgCGCCGGGcc-CGGCgccGGcGGCCCCc -3'
miRNA:   3'- -GCgGCGGCCCcaaGUCGa--CC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 10726 0.75 0.133107
Target:  5'- gCGCCGCCagcgaguuuaGGGG---GGC-GGGGCCCCg -3'
miRNA:   3'- -GCGGCGG----------CCCCaagUCGaCCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 11169 0.67 0.427917
Target:  5'- cCGgCGUCGGG----AGCUGGGGCUgCCg -3'
miRNA:   3'- -GCgGCGGCCCcaagUCGACCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 11196 0.66 0.462178
Target:  5'- gGuCCGCgCGGGGcuggUCgaGGUugaagUGGGGCCUCu -3'
miRNA:   3'- gC-GGCG-GCCCCa---AG--UCG-----ACCCCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.