miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 58731 0.66 0.488796
Target:  5'- cCGCCG-CGGGGUgcccccgccgCGGCccccGGcGCCCCc -3'
miRNA:   3'- -GCGGCgGCCCCAa---------GUCGa---CCcCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 29902 0.66 0.470968
Target:  5'- gGCCcuGCCGGccg-CcGCggGGGGCCCCu -3'
miRNA:   3'- gCGG--CGGCCccaaGuCGa-CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 124657 0.66 0.462178
Target:  5'- gGCCGUCGGGGaagccCAGCUc-GGCCUg -3'
miRNA:   3'- gCGGCGGCCCCaa---GUCGAccCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 45865 1.1 0.000293
Target:  5'- uCGCCGCCGGGGUUCAGCUGGGGCCCCa -3'
miRNA:   3'- -GCGGCGGCCCCAAGUCGACCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 115728 0.66 0.488796
Target:  5'- uGCCGCCacGGGcgC-GCUGGuGGCCa- -3'
miRNA:   3'- gCGGCGGc-CCCaaGuCGACC-CCGGgg -5'
6461 5' -65.6 NC_001847.1 + 81229 0.66 0.488796
Target:  5'- uCGCCGUcgccuccgggCGGGGccgUC-GCgaggacggGGGGCCCg -3'
miRNA:   3'- -GCGGCG----------GCCCCa--AGuCGa-------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 49813 0.66 0.488796
Target:  5'- uGCUGCUGGGcg-C-GCUGGcGGCCUg -3'
miRNA:   3'- gCGGCGGCCCcaaGuCGACC-CCGGGg -5'
6461 5' -65.6 NC_001847.1 + 34088 0.66 0.488796
Target:  5'- gGCC-CCGGGGccggccUCGGCgggugcgcaaauUGGGaCCCCg -3'
miRNA:   3'- gCGGcGGCCCCa-----AGUCG------------ACCCcGGGG- -5'
6461 5' -65.6 NC_001847.1 + 50347 0.66 0.479841
Target:  5'- uGCCGCUaGGGUaaAGCUGGcgcuGGCCg- -3'
miRNA:   3'- gCGGCGGcCCCAagUCGACC----CCGGgg -5'
6461 5' -65.6 NC_001847.1 + 50310 0.66 0.470968
Target:  5'- aGCUGCgGgGGGUUguGCgcacgcaGGCCCCc -3'
miRNA:   3'- gCGGCGgC-CCCAAguCGacc----CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 23064 0.66 0.479841
Target:  5'- gGCUggGCUGGGGUgggcUgGGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCA----AgUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 57221 0.66 0.479841
Target:  5'- gGCCGCCGGGGcUCGucGCcgagaGGuGcGCCaCCg -3'
miRNA:   3'- gCGGCGGCCCCaAGU--CGa----CC-C-CGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 57398 0.66 0.488796
Target:  5'- -aCCGCUGGGGUaggUCcgGGC--GGGCCUCg -3'
miRNA:   3'- gcGGCGGCCCCA---AG--UCGacCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 13106 0.66 0.470968
Target:  5'- aCGCCGCCGuccuccUCGGCUGcGGCCgCg -3'
miRNA:   3'- -GCGGCGGCccca--AGUCGACcCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 129150 0.66 0.488796
Target:  5'- gGUCGCCGuuGUUCGGCUGcc-CCCCg -3'
miRNA:   3'- gCGGCGGCccCAAGUCGACcccGGGG- -5'
6461 5' -65.6 NC_001847.1 + 116389 0.66 0.479841
Target:  5'- nCGCCuuaGCCGcGGcggCGGCgcucuGGGCCCCg -3'
miRNA:   3'- -GCGG---CGGCcCCaa-GUCGac---CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 105683 0.66 0.470968
Target:  5'- gGCCGCgGGcGGcgcUUCGGCcgcGGGcggcgccacGCCCCa -3'
miRNA:   3'- gCGGCGgCC-CC---AAGUCGa--CCC---------CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 60010 0.66 0.462178
Target:  5'- -aCCGCCGGccc-CGGC-GGGGCCCg -3'
miRNA:   3'- gcGGCGGCCccaaGUCGaCCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 122204 0.66 0.488796
Target:  5'- cCGCCacacuaGCCGGGGccgGGUgcccucaGGGGCgCCCa -3'
miRNA:   3'- -GCGG------CGGCCCCaagUCGa------CCCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 52119 0.66 0.488796
Target:  5'- aGCgGCCGcGGGc-CGGC-GGcGCCCCa -3'
miRNA:   3'- gCGgCGGC-CCCaaGUCGaCCcCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.