miRNA display CGI


Results 1 - 20 of 811 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6470 3' -58.3 NC_001847.1 + 63423 0.66 0.836667
Target:  5'- gCgCACGCGG-CgC-CGGCGGGCc-GGCg -3'
miRNA:   3'- -GgGUGCGUCuG-GuGCUGCCCGuaCCG- -5'
6470 3' -58.3 NC_001847.1 + 100750 0.66 0.836667
Target:  5'- gCCGCGUcuGCCGCGGCGGc---GGCc -3'
miRNA:   3'- gGGUGCGucUGGUGCUGCCcguaCCG- -5'
6470 3' -58.3 NC_001847.1 + 16053 0.66 0.836667
Target:  5'- cCCCGCgGCGG-CCGCGGCGccucuGCugGGCg -3'
miRNA:   3'- -GGGUG-CGUCuGGUGCUGCc----CGuaCCG- -5'
6470 3' -58.3 NC_001847.1 + 54417 0.66 0.836667
Target:  5'- gCCGCGguuGGCCuCGGCGGcCcgGGCa -3'
miRNA:   3'- gGGUGCgu-CUGGuGCUGCCcGuaCCG- -5'
6470 3' -58.3 NC_001847.1 + 36952 0.66 0.836667
Target:  5'- gCCgaGCGgGGGCUGCGgccagcGCGGGCGccGGCg -3'
miRNA:   3'- gGG--UGCgUCUGGUGC------UGCCCGUa-CCG- -5'
6470 3' -58.3 NC_001847.1 + 51512 0.66 0.836667
Target:  5'- gCCGCGcCGGugCGgcgcCGGCaGGCGggGGCg -3'
miRNA:   3'- gGGUGC-GUCugGU----GCUGcCCGUa-CCG- -5'
6470 3' -58.3 NC_001847.1 + 60117 0.66 0.836667
Target:  5'- gCUCGCGCGGcgugaGCGAgGgGGCGUcGGCg -3'
miRNA:   3'- -GGGUGCGUCugg--UGCUgC-CCGUA-CCG- -5'
6470 3' -58.3 NC_001847.1 + 48364 0.66 0.836667
Target:  5'- gCCCA-GCAGcguCACGAccguggcgccgcCGGGCcgGGCc -3'
miRNA:   3'- -GGGUgCGUCug-GUGCU------------GCCCGuaCCG- -5'
6470 3' -58.3 NC_001847.1 + 89393 0.66 0.836667
Target:  5'- -aCGCGCAcGuucUCACgGACGGGCucUGGCc -3'
miRNA:   3'- ggGUGCGU-Cu--GGUG-CUGCCCGu-ACCG- -5'
6470 3' -58.3 NC_001847.1 + 36078 0.66 0.836667
Target:  5'- -gCGCGCuGGACgCGCGGCuGGCGgagcgcGGCg -3'
miRNA:   3'- ggGUGCG-UCUG-GUGCUGcCCGUa-----CCG- -5'
6470 3' -58.3 NC_001847.1 + 74583 0.66 0.836667
Target:  5'- gCUgACGCAgGGCCugcAgGAC-GGCGUGGCc -3'
miRNA:   3'- -GGgUGCGU-CUGG---UgCUGcCCGUACCG- -5'
6470 3' -58.3 NC_001847.1 + 29713 0.66 0.836667
Target:  5'- --gGCGCgAGACUGCGgcGCGGGagcgGUGGCc -3'
miRNA:   3'- gggUGCG-UCUGGUGC--UGCCCg---UACCG- -5'
6470 3' -58.3 NC_001847.1 + 68202 0.66 0.836667
Target:  5'- gCCCgcacaguaggggGCGCacGGGCCGCGGCGGGgcc-GCa -3'
miRNA:   3'- -GGG------------UGCG--UCUGGUGCUGCCCguacCG- -5'
6470 3' -58.3 NC_001847.1 + 127032 0.66 0.836667
Target:  5'- cCCCGCGguuguacgGGGCCACG-UGGGUcgGcGCc -3'
miRNA:   3'- -GGGUGCg-------UCUGGUGCuGCCCGuaC-CG- -5'
6470 3' -58.3 NC_001847.1 + 15071 0.66 0.836667
Target:  5'- cCCCGCGCGGcucggcaggaGCCGgGGCuaGGaGCAaagggGGCg -3'
miRNA:   3'- -GGGUGCGUC----------UGGUgCUG--CC-CGUa----CCG- -5'
6470 3' -58.3 NC_001847.1 + 3854 0.66 0.836667
Target:  5'- cCCCagACGUAGACgGCGcCGGGgcUGcGCa -3'
miRNA:   3'- -GGG--UGCGUCUGgUGCuGCCCguAC-CG- -5'
6470 3' -58.3 NC_001847.1 + 11682 0.66 0.836667
Target:  5'- gCCCGCgGCGG-CCGuCGcCGGGCcaagcccGGCa -3'
miRNA:   3'- -GGGUG-CGUCuGGU-GCuGCCCGua-----CCG- -5'
6470 3' -58.3 NC_001847.1 + 123103 0.66 0.836667
Target:  5'- -gCGCGCAGGgCGuccagcgcucCGcCGGGCAgaggGGCg -3'
miRNA:   3'- ggGUGCGUCUgGU----------GCuGCCCGUa---CCG- -5'
6470 3' -58.3 NC_001847.1 + 58663 0.66 0.836667
Target:  5'- uCgCACGCuugcGGCggUugGGCGGGCGgcaGGCu -3'
miRNA:   3'- -GgGUGCGu---CUG--GugCUGCCCGUa--CCG- -5'
6470 3' -58.3 NC_001847.1 + 121165 0.66 0.836667
Target:  5'- aCCCGcCGCuugccGGCCAgGgGCGGGCucgccacgGGCc -3'
miRNA:   3'- -GGGU-GCGu----CUGGUgC-UGCCCGua------CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.