miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6470 5' -57 NC_001847.1 + 132380 0.66 0.834759
Target:  5'- -gGCggggGCGCCGGcgcCG-GCGCCGCc- -3'
miRNA:   3'- caUGa---CGCGGCUua-GCaCGCGGCGua -5'
6470 5' -57 NC_001847.1 + 60478 0.66 0.834759
Target:  5'- -cGCcaugGCGCCGccgcuUUGUGCGCgCGCGg -3'
miRNA:   3'- caUGa---CGCGGCuu---AGCACGCG-GCGUa -5'
6470 5' -57 NC_001847.1 + 74372 0.66 0.834759
Target:  5'- cUGCUGCGCC---UCGUgGCGCUGgAg -3'
miRNA:   3'- cAUGACGCGGcuuAGCA-CGCGGCgUa -5'
6470 5' -57 NC_001847.1 + 43388 0.66 0.834759
Target:  5'- -cGCUGCgaucuucacgGCCGAcgCGcgcaggGCGCUGCAg -3'
miRNA:   3'- caUGACG----------CGGCUuaGCa-----CGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 84903 0.66 0.834759
Target:  5'- -aGCUuCGCCGcGUCGUcUGCCGCGc -3'
miRNA:   3'- caUGAcGCGGCuUAGCAcGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 86775 0.66 0.834759
Target:  5'- -gGCgGCGCCacGGUCGUGaCGCUGCu- -3'
miRNA:   3'- caUGaCGCGGc-UUAGCAC-GCGGCGua -5'
6470 5' -57 NC_001847.1 + 51649 0.66 0.834759
Target:  5'- -cGCaGCGCCGcggCGcUGCGcCCGCAa -3'
miRNA:   3'- caUGaCGCGGCuuaGC-ACGC-GGCGUa -5'
6470 5' -57 NC_001847.1 + 29567 0.66 0.834759
Target:  5'- -gGCggggGCGCCGGcgcCG-GCGCCGCc- -3'
miRNA:   3'- caUGa---CGCGGCUua-GCaCGCGGCGua -5'
6470 5' -57 NC_001847.1 + 115976 0.66 0.834759
Target:  5'- cGUGCUGCGCgGggUaacaaCGgGCGCgGCc- -3'
miRNA:   3'- -CAUGACGCGgCuuA-----GCaCGCGgCGua -5'
6470 5' -57 NC_001847.1 + 70752 0.66 0.82627
Target:  5'- ----aGCGCCGcgcagagCGgGCGCCGCAUu -3'
miRNA:   3'- caugaCGCGGCuua----GCaCGCGGCGUA- -5'
6470 5' -57 NC_001847.1 + 4710 0.66 0.82627
Target:  5'- -gGCUGUGCCcgugCGUGUagacaGCCGCGUc -3'
miRNA:   3'- caUGACGCGGcuuaGCACG-----CGGCGUA- -5'
6470 5' -57 NC_001847.1 + 131223 0.66 0.82627
Target:  5'- -cGCUgccaGCGCUGug-CGUGCGuCCGCGc -3'
miRNA:   3'- caUGA----CGCGGCuuaGCACGC-GGCGUa -5'
6470 5' -57 NC_001847.1 + 52079 0.66 0.82627
Target:  5'- cGUGUUGCGCUcu-UCGgccGCGCCGCGg -3'
miRNA:   3'- -CAUGACGCGGcuuAGCa--CGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 62695 0.66 0.82627
Target:  5'- gGUGCaGCGCCGcguccagCGUGCGCauguucCGCGUu -3'
miRNA:   3'- -CAUGaCGCGGCuua----GCACGCG------GCGUA- -5'
6470 5' -57 NC_001847.1 + 111246 0.66 0.822823
Target:  5'- cUGCUGCGcCCGAAccugccgcugaugCGcGCGCUGCGa -3'
miRNA:   3'- cAUGACGC-GGCUUa------------GCaCGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 74141 0.66 0.817598
Target:  5'- -cGCgGCGCCGAuggCGgccucgacgGCGCCGUg- -3'
miRNA:   3'- caUGaCGCGGCUua-GCa--------CGCGGCGua -5'
6470 5' -57 NC_001847.1 + 28684 0.66 0.817598
Target:  5'- aGUACgcgGCGCUGGuggaccugguGUaCGcGCGCCGCGa -3'
miRNA:   3'- -CAUGa--CGCGGCU----------UA-GCaCGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 83414 0.66 0.817598
Target:  5'- -aGCcGCGCCGGcauUUGguUGCGCUGCAg -3'
miRNA:   3'- caUGaCGCGGCUu--AGC--ACGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 131497 0.66 0.817598
Target:  5'- aGUACgcgGCGCUGGuggaccugguGUaCGcGCGCCGCGa -3'
miRNA:   3'- -CAUGa--CGCGGCU----------UA-GCaCGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 32367 0.66 0.817598
Target:  5'- -cGCggggggGCGCCGGcGUCGcggGCGUCGCGc -3'
miRNA:   3'- caUGa-----CGCGGCU-UAGCa--CGCGGCGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.