miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6473 3' -48.6 NC_001847.1 + 134029 0.72 0.956274
Target:  5'- uGGUGcUGg--AgGCCGCGGCGGCGCc -3'
miRNA:   3'- gCCAC-AUauaUgUGGCGCUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 134500 0.71 0.963777
Target:  5'- gGGUGUAgUGUGgGCCGUGcggccGCGGCGCa -3'
miRNA:   3'- gCCACAU-AUAUgUGGCGC-----UGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 116023 0.71 0.963777
Target:  5'- gCGGUGUGccgGUGCACUGCG-C-GCACu -3'
miRNA:   3'- -GCCACAUa--UAUGUGGCGCuGuUGUGc -5'
6473 3' -48.6 NC_001847.1 + 93055 0.71 0.97033
Target:  5'- aCGGUGccg--GCACCGCGAggcCGAUGCGc -3'
miRNA:   3'- -GCCACauauaUGUGGCGCU---GUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 7250 0.71 0.97033
Target:  5'- gGGUGgcUGUgcggGCGCgGCGGgGGCACGc -3'
miRNA:   3'- gCCACauAUA----UGUGgCGCUgUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 18755 0.7 0.973267
Target:  5'- aGGUGcGUGUGCAgguccUCGCGGUAGCGCGc -3'
miRNA:   3'- gCCACaUAUAUGU-----GGCGCUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 68730 0.7 0.973267
Target:  5'- gGGUGUAcGUcagcccGCGCCGCGGauguGCGCGc -3'
miRNA:   3'- gCCACAUaUA------UGUGGCGCUgu--UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 96329 0.7 0.973267
Target:  5'- uCGGUGUcgGUGgGCgGCGggcuggcguGCGACGCGc -3'
miRNA:   3'- -GCCACAuaUAUgUGgCGC---------UGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 16832 0.7 0.973267
Target:  5'- uCGGUGgcgcggGCAUCGgGGCGGCGCu -3'
miRNA:   3'- -GCCACauaua-UGUGGCgCUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 37199 0.7 0.975988
Target:  5'- cCGGUGcgag-GCGCCcggugccgcuugGCGGCGGCGCGg -3'
miRNA:   3'- -GCCACauauaUGUGG------------CGCUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 89601 0.7 0.9785
Target:  5'- gCGGUGaac--GCGCUGCG-CGGCACGg -3'
miRNA:   3'- -GCCACauauaUGUGGCGCuGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 21157 0.7 0.980139
Target:  5'- -cGUGaUGUAUACGCUccuggagcgcuucuGCGGCGACGCGc -3'
miRNA:   3'- gcCAC-AUAUAUGUGG--------------CGCUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 100360 0.7 0.980812
Target:  5'- gGGUcGUAgccgcGCGCCGCGGCcgcGGCGCGc -3'
miRNA:   3'- gCCA-CAUaua--UGUGGCGCUG---UUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 22169 0.7 0.980812
Target:  5'- uGGUGgacacgAUcGCGCCGCGAauGCGCGg -3'
miRNA:   3'- gCCACaua---UA-UGUGGCGCUguUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 43232 0.7 0.980812
Target:  5'- cCGGUGgcgGUGgggGCGCgCG-GGCGGCGCGg -3'
miRNA:   3'- -GCCACa--UAUa--UGUG-GCgCUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 84366 0.7 0.982934
Target:  5'- aGGUGUAUugagcgGCcgcggACCGCGGCAGaccCGCGa -3'
miRNA:   3'- gCCACAUAua----UG-----UGGCGCUGUU---GUGC- -5'
6473 3' -48.6 NC_001847.1 + 34140 0.7 0.982934
Target:  5'- gCGGcaGUAacUGcCGCCGCGGCGGCACc -3'
miRNA:   3'- -GCCa-CAUauAU-GUGGCGCUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 59530 0.7 0.982934
Target:  5'- -cGUGgggcgGCAUCGCGGCAGCugGc -3'
miRNA:   3'- gcCACauauaUGUGGCGCUGUUGugC- -5'
6473 3' -48.6 NC_001847.1 + 116446 0.7 0.982934
Target:  5'- gCGGUGggcgcugGCGCaCGCG-CGGCGCGg -3'
miRNA:   3'- -GCCACauaua--UGUG-GCGCuGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 4988 0.7 0.982934
Target:  5'- gGGUGcg---GCgGCCGCGGCAaaGCGCGg -3'
miRNA:   3'- gCCACauauaUG-UGGCGCUGU--UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.