miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6473 3' -48.6 NC_001847.1 + 623 0.75 0.842801
Target:  5'- -cGUGUAccaccacAUGCGCCGCGGCcGCACGg -3'
miRNA:   3'- gcCACAUa------UAUGUGGCGCUGuUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 1550 0.68 0.995777
Target:  5'- cCGGgccgaagacGCGCCGCGAggcCAGCACGg -3'
miRNA:   3'- -GCCacauaua--UGUGGCGCU---GUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 1613 0.73 0.916068
Target:  5'- gCGGcGcac-UGCGCCGCGGCAGCACc -3'
miRNA:   3'- -GCCaCauauAUGUGGCGCUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 2213 0.67 0.998179
Target:  5'- gCGGcaGUAggccgccaGCGCCGCGGCGcuggGCGCGg -3'
miRNA:   3'- -GCCa-CAUaua-----UGUGGCGCUGU----UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 4580 0.67 0.997816
Target:  5'- uGGUGcgggucgcgGUGCGCgGCGACGAagGCGg -3'
miRNA:   3'- gCCACaua------UAUGUGgCGCUGUUg-UGC- -5'
6473 3' -48.6 NC_001847.1 + 4988 0.7 0.982934
Target:  5'- gGGUGcg---GCgGCCGCGGCAaaGCGCGg -3'
miRNA:   3'- gCCACauauaUG-UGGCGCUGU--UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 5872 0.67 0.998179
Target:  5'- aGGUGguccaGCGCUGCGcGCAGgGCGg -3'
miRNA:   3'- gCCACauauaUGUGGCGC-UGUUgUGC- -5'
6473 3' -48.6 NC_001847.1 + 6660 0.67 0.997816
Target:  5'- uGGUGgAUGUagagcgaggcuAgGCCGCGGCGGC-CGg -3'
miRNA:   3'- gCCACaUAUA-----------UgUGGCGCUGUUGuGC- -5'
6473 3' -48.6 NC_001847.1 + 7250 0.71 0.97033
Target:  5'- gGGUGgcUGUgcggGCGCgGCGGgGGCACGc -3'
miRNA:   3'- gCCACauAUA----UGUGgCGCUgUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 7610 0.66 0.999166
Target:  5'- uCGGUGg----GCGCUGUGGagGGCACGa -3'
miRNA:   3'- -GCCACauauaUGUGGCGCUg-UUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 11884 0.67 0.997395
Target:  5'- aCGGUGUAaucugGUGCGgccgggguCCGCGcUGGCGCGg -3'
miRNA:   3'- -GCCACAUa----UAUGU--------GGCGCuGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 12157 0.66 0.99931
Target:  5'- -cGUGUAUGauUACAUCgacggcgauagcaGCGACAGCGCc -3'
miRNA:   3'- gcCACAUAU--AUGUGG-------------CGCUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 12561 0.67 0.997303
Target:  5'- aGGUGcgcaacggGCGCCGCGuacGCGGCGCc -3'
miRNA:   3'- gCCACauaua---UGUGGCGC---UGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 13654 0.73 0.933104
Target:  5'- gCGGUGcga----ACCGCGACGACGCu -3'
miRNA:   3'- -GCCACauauaugUGGCGCUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 13928 0.69 0.991001
Target:  5'- uCGGUGcc---GCGCCGCGGCAGgGgGg -3'
miRNA:   3'- -GCCACauauaUGUGGCGCUGUUgUgC- -5'
6473 3' -48.6 NC_001847.1 + 14547 0.67 0.997395
Target:  5'- uGGaGUAUG---ACCGCGccGCAGCGCGg -3'
miRNA:   3'- gCCaCAUAUaugUGGCGC--UGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 16325 0.67 0.998179
Target:  5'- gGGUGUAggcaagcuCACCGCaacggcgaGCAGCGCGc -3'
miRNA:   3'- gCCACAUauau----GUGGCGc-------UGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 16372 0.66 0.999324
Target:  5'- cCGGUGccgcucACACCGCGcgccACAAcCGCGa -3'
miRNA:   3'- -GCCACauaua-UGUGGCGC----UGUU-GUGC- -5'
6473 3' -48.6 NC_001847.1 + 16832 0.7 0.973267
Target:  5'- uCGGUGgcgcggGCAUCGgGGCGGCGCu -3'
miRNA:   3'- -GCCACauaua-UGUGGCgCUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 18755 0.7 0.973267
Target:  5'- aGGUGcGUGUGCAgguccUCGCGGUAGCGCGc -3'
miRNA:   3'- gCCACaUAUAUGU-----GGCGCUGUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.