miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6473 3' -48.6 NC_001847.1 + 43232 0.7 0.980812
Target:  5'- cCGGUGgcgGUGgggGCGCgCG-GGCGGCGCGg -3'
miRNA:   3'- -GCCACa--UAUa--UGUG-GCgCUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 32439 0.72 0.956274
Target:  5'- gCGGUGgcccagGCGCUGCcGCAGCACa -3'
miRNA:   3'- -GCCACauaua-UGUGGCGcUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 134029 0.72 0.956274
Target:  5'- uGGUGcUGg--AgGCCGCGGCGGCGCc -3'
miRNA:   3'- gCCAC-AUauaUgUGGCGCUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 7250 0.71 0.97033
Target:  5'- gGGUGgcUGUgcggGCGCgGCGGgGGCACGc -3'
miRNA:   3'- gCCACauAUA----UGUGgCGCUgUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 93055 0.71 0.97033
Target:  5'- aCGGUGccg--GCACCGCGAggcCGAUGCGc -3'
miRNA:   3'- -GCCACauauaUGUGGCGCU---GUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 96329 0.7 0.973267
Target:  5'- uCGGUGUcgGUGgGCgGCGggcuggcguGCGACGCGc -3'
miRNA:   3'- -GCCACAuaUAUgUGgCGC---------UGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 37199 0.7 0.975988
Target:  5'- cCGGUGcgag-GCGCCcggugccgcuugGCGGCGGCGCGg -3'
miRNA:   3'- -GCCACauauaUGUGG------------CGCUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 21157 0.7 0.980139
Target:  5'- -cGUGaUGUAUACGCUccuggagcgcuucuGCGGCGACGCGc -3'
miRNA:   3'- gcCAC-AUAUAUGUGG--------------CGCUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 22169 0.7 0.980812
Target:  5'- uGGUGgacacgAUcGCGCCGCGAauGCGCGg -3'
miRNA:   3'- gCCACaua---UA-UGUGGCGCUguUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 34138 0.72 0.943147
Target:  5'- gCGGUGgc----CGCCGCGGCgAGCGCGc -3'
miRNA:   3'- -GCCACauauauGUGGCGCUG-UUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 19399 0.72 0.940244
Target:  5'- cCGGUGUGUGUGCccaugGCCaccagcgcgcccgugGCGGCAagcgcACACGg -3'
miRNA:   3'- -GCCACAUAUAUG-----UGG---------------CGCUGU-----UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 13654 0.73 0.933104
Target:  5'- gCGGUGcga----ACCGCGACGACGCu -3'
miRNA:   3'- -GCCACauauaugUGGCGCUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 52785 0.79 0.66506
Target:  5'- uGGUGUA---GCGCgGCGGCGACAUGg -3'
miRNA:   3'- gCCACAUauaUGUGgCGCUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 131518 0.79 0.686385
Target:  5'- uGGUGUAcgcGCGCCGCGACGcCAUGg -3'
miRNA:   3'- gCCACAUauaUGUGGCGCUGUuGUGC- -5'
6473 3' -48.6 NC_001847.1 + 623 0.75 0.842801
Target:  5'- -cGUGUAccaccacAUGCGCCGCGGCcGCACGg -3'
miRNA:   3'- gcCACAUa------UAUGUGGCGCUGuUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 96300 0.74 0.875008
Target:  5'- uGGUGUGUgaGUGCGCCGCGGgGgauCGCu -3'
miRNA:   3'- gCCACAUA--UAUGUGGCGCUgUu--GUGc -5'
6473 3' -48.6 NC_001847.1 + 46274 0.74 0.882478
Target:  5'- -cGUGUAUGUAcCGCCGCGucucgaGCAGCAUGu -3'
miRNA:   3'- gcCACAUAUAU-GUGGCGC------UGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 56029 0.74 0.889703
Target:  5'- uGGUGgccuUugACCGCGACGACGa- -3'
miRNA:   3'- gCCACauauAugUGGCGCUGUUGUgc -5'
6473 3' -48.6 NC_001847.1 + 104426 0.73 0.916068
Target:  5'- gCGGcGcac-UGCGCCGCGGCAGCACc -3'
miRNA:   3'- -GCCaCauauAUGUGGCGCUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 70438 0.73 0.927688
Target:  5'- uCGGUGgcgGUgccgcgccugacGCACUGCGACAcGCGCGg -3'
miRNA:   3'- -GCCACauaUA------------UGUGGCGCUGU-UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.