miRNA display CGI


Results 41 - 60 of 1224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6473 5' -62 NC_001847.1 + 94039 0.66 0.649871
Target:  5'- -cCGCGCCaaccacgugcaGGCGcAGCuggGCCGgCACCa -3'
miRNA:   3'- gaGCGCGGgg---------CCGC-UCGu--UGGC-GUGG- -5'
6473 5' -62 NC_001847.1 + 33724 0.66 0.648887
Target:  5'- uCUCGgaGCCgCGGCGGGagacgaGACCcccgauugccggcgGCGCCg -3'
miRNA:   3'- -GAGCg-CGGgGCCGCUCg-----UUGG--------------CGUGG- -5'
6473 5' -62 NC_001847.1 + 59215 0.66 0.645935
Target:  5'- -cCGCGCCgugcgcuugcacgcgUCGGCcgucGGCGAUgGCGCCg -3'
miRNA:   3'- gaGCGCGG---------------GGCCGc---UCGUUGgCGUGG- -5'
6473 5' -62 NC_001847.1 + 53604 0.66 0.641998
Target:  5'- -gCGgGCCacggUGGCGGGCGGCggggugGCACCg -3'
miRNA:   3'- gaGCgCGGg---GCCGCUCGUUGg-----CGUGG- -5'
6473 5' -62 NC_001847.1 + 65194 0.66 0.641998
Target:  5'- gUCGCGCCCgCGGaCGccaaCGugCGCAUg -3'
miRNA:   3'- gAGCGCGGG-GCC-GCuc--GUugGCGUGg -5'
6473 5' -62 NC_001847.1 + 27134 0.66 0.641998
Target:  5'- gUCGCgaaacuGCCguCCGGgGGGCGcaGCCGCGgCg -3'
miRNA:   3'- gAGCG------CGG--GGCCgCUCGU--UGGCGUgG- -5'
6473 5' -62 NC_001847.1 + 13756 0.66 0.641998
Target:  5'- aUCGCGCagCGGCugauGGGCAGCCugaACCu -3'
miRNA:   3'- gAGCGCGggGCCG----CUCGUUGGcg-UGG- -5'
6473 5' -62 NC_001847.1 + 15085 0.66 0.641998
Target:  5'- aUCGC-CUgCGGC-AGCGggGCCGCGCUc -3'
miRNA:   3'- gAGCGcGGgGCCGcUCGU--UGGCGUGG- -5'
6473 5' -62 NC_001847.1 + 42447 0.66 0.641998
Target:  5'- -gCGCGCgCUcGUGGGCAGagggugcguuCCGCGCCc -3'
miRNA:   3'- gaGCGCGgGGcCGCUCGUU----------GGCGUGG- -5'
6473 5' -62 NC_001847.1 + 34523 0.66 0.641998
Target:  5'- -aCG-GCgCCGGCGAuGCG-CCGCccGCCg -3'
miRNA:   3'- gaGCgCGgGGCCGCU-CGUuGGCG--UGG- -5'
6473 5' -62 NC_001847.1 + 87077 0.66 0.641998
Target:  5'- -gUGCGCCCCcgccuuucgcGGCGcGCGcggACuCGCGCUg -3'
miRNA:   3'- gaGCGCGGGG----------CCGCuCGU---UG-GCGUGG- -5'
6473 5' -62 NC_001847.1 + 66615 0.66 0.641998
Target:  5'- aUCGUGCUCauuGCGGaCAAgCGCACCg -3'
miRNA:   3'- gAGCGCGGGgc-CGCUcGUUgGCGUGG- -5'
6473 5' -62 NC_001847.1 + 53184 0.66 0.641998
Target:  5'- -cUGCGaCCCGGCuguGGCGcGCCGcCACCu -3'
miRNA:   3'- gaGCGCgGGGCCGc--UCGU-UGGC-GUGG- -5'
6473 5' -62 NC_001847.1 + 87627 0.66 0.641998
Target:  5'- uUgGCGCCCgGGCugcgcuggaAGcCAACUGCGCUg -3'
miRNA:   3'- gAgCGCGGGgCCGc--------UC-GUUGGCGUGG- -5'
6473 5' -62 NC_001847.1 + 19205 0.66 0.641998
Target:  5'- -cUGUgGCCCagaCGGCGAGU-GCCGCugCg -3'
miRNA:   3'- gaGCG-CGGG---GCCGCUCGuUGGCGugG- -5'
6473 5' -62 NC_001847.1 + 132309 0.66 0.641998
Target:  5'- -gCGCGCUguucagcccgCCGGCgGAGguGCCgGCGCg -3'
miRNA:   3'- gaGCGCGG----------GGCCG-CUCguUGG-CGUGg -5'
6473 5' -62 NC_001847.1 + 83921 0.66 0.641998
Target:  5'- -gCGCGCCC--GCGAGCAggGCC-CGCUc -3'
miRNA:   3'- gaGCGCGGGgcCGCUCGU--UGGcGUGG- -5'
6473 5' -62 NC_001847.1 + 29589 0.66 0.641998
Target:  5'- uCUUGCGagaCCCGGCcuuuGCGccccacuucGCCGcCGCCg -3'
miRNA:   3'- -GAGCGCg--GGGCCGcu--CGU---------UGGC-GUGG- -5'
6473 5' -62 NC_001847.1 + 117026 0.66 0.641998
Target:  5'- -gCGCGCCCCaccgccGCgGAGCuGCUggaGCACCc -3'
miRNA:   3'- gaGCGCGGGGc-----CG-CUCGuUGG---CGUGG- -5'
6473 5' -62 NC_001847.1 + 6283 0.66 0.641998
Target:  5'- aCUCGCGCaggcagcggacCUCGGCGAGguCGGCCucgauGCGCg -3'
miRNA:   3'- -GAGCGCG-----------GGGCCGCUC--GUUGG-----CGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.