miRNA display CGI


Results 21 - 40 of 1224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6473 5' -62 NC_001847.1 + 1561 0.68 0.525255
Target:  5'- -aCGCGCCgCgaGGCcAGCAcgGCgCGCGCCa -3'
miRNA:   3'- gaGCGCGG-Gg-CCGcUCGU--UG-GCGUGG- -5'
6473 5' -62 NC_001847.1 + 1621 0.69 0.478812
Target:  5'- -cUGCGCCgCGGC-AGC-ACCGCGgCg -3'
miRNA:   3'- gaGCGCGGgGCCGcUCGuUGGCGUgG- -5'
6473 5' -62 NC_001847.1 + 1731 0.7 0.417419
Target:  5'- -cCGCGCCgCGGC---CAGCCGCGCg -3'
miRNA:   3'- gaGCGCGGgGCCGcucGUUGGCGUGg -5'
6473 5' -62 NC_001847.1 + 1943 0.71 0.34523
Target:  5'- aCUCGgGCCgCCGGCGcucguccucgccgGGCGgcgccGCCaGCGCCu -3'
miRNA:   3'- -GAGCgCGG-GGCCGC-------------UCGU-----UGG-CGUGG- -5'
6473 5' -62 NC_001847.1 + 2061 0.68 0.51582
Target:  5'- -aCGCGCCgCCGcaGCGguGGCGGCgaGCGCCc -3'
miRNA:   3'- gaGCGCGG-GGC--CGC--UCGUUGg-CGUGG- -5'
6473 5' -62 NC_001847.1 + 2130 0.69 0.451932
Target:  5'- --aGCGCCUCggggucgaaGGCGAGCG-CCggGCGCCa -3'
miRNA:   3'- gagCGCGGGG---------CCGCUCGUuGG--CGUGG- -5'
6473 5' -62 NC_001847.1 + 2181 0.73 0.253147
Target:  5'- -cCGCGCCgCCugggcGGCGuGCGGgCGCACCu -3'
miRNA:   3'- gaGCGCGG-GG-----CCGCuCGUUgGCGUGG- -5'
6473 5' -62 NC_001847.1 + 2200 0.66 0.621318
Target:  5'- -cCGCGaCCUCGGgGcGGCAguaggccGCCaGCGCCg -3'
miRNA:   3'- gaGCGC-GGGGCCgC-UCGU-------UGG-CGUGG- -5'
6473 5' -62 NC_001847.1 + 2316 0.75 0.20015
Target:  5'- -aUGgGCCCCagcacgcgGGCGGGCAgcggcggcucccGCCGCGCCg -3'
miRNA:   3'- gaGCgCGGGG--------CCGCUCGU------------UGGCGUGG- -5'
6473 5' -62 NC_001847.1 + 2378 0.68 0.485197
Target:  5'- -gCGCGCCCgcgaagacggCGGUGAcGCGcucggccguggcucGCUGCGCCg -3'
miRNA:   3'- gaGCGCGGG----------GCCGCU-CGU--------------UGGCGUGG- -5'
6473 5' -62 NC_001847.1 + 2434 0.66 0.622303
Target:  5'- -cCGCGgCggCCGGCaGGGCcGCCGCcucGCCg -3'
miRNA:   3'- gaGCGCgG--GGCCG-CUCGuUGGCG---UGG- -5'
6473 5' -62 NC_001847.1 + 2441 0.72 0.306145
Target:  5'- uUCGCGCcagccgcagcgagcuCCCGaucgaGCGGGCGGCgGCGCCc -3'
miRNA:   3'- gAGCGCG---------------GGGC-----CGCUCGUUGgCGUGG- -5'
6473 5' -62 NC_001847.1 + 2519 0.68 0.487946
Target:  5'- cCUCGCGCUuuGcugcCGGGCcgcggGACCGCugCu -3'
miRNA:   3'- -GAGCGCGGggCc---GCUCG-----UUGGCGugG- -5'
6473 5' -62 NC_001847.1 + 2531 0.67 0.573302
Target:  5'- cCUCG-GaCCCGGCGGcGCucCCGcCGCCg -3'
miRNA:   3'- -GAGCgCgGGGCCGCU-CGuuGGC-GUGG- -5'
6473 5' -62 NC_001847.1 + 2586 0.7 0.37662
Target:  5'- -gCGCgGCCgCCGcggccgcacGCGAGCccGCCGCGCCg -3'
miRNA:   3'- gaGCG-CGG-GGC---------CGCUCGu-UGGCGUGG- -5'
6473 5' -62 NC_001847.1 + 2626 0.7 0.425897
Target:  5'- --gGUGCUUCGGCGGGaCcGCCGuCGCCg -3'
miRNA:   3'- gagCGCGGGGCCGCUC-GuUGGC-GUGG- -5'
6473 5' -62 NC_001847.1 + 2745 0.68 0.51582
Target:  5'- --gGC-CCCCGGCccGGcGCGGCgGCGCCg -3'
miRNA:   3'- gagCGcGGGGCCG--CU-CGUUGgCGUGG- -5'
6473 5' -62 NC_001847.1 + 2822 0.7 0.400776
Target:  5'- -cCGCGCCggcaccuccgCCGGCGGGCugaacagcGCgCGCGCCn -3'
miRNA:   3'- gaGCGCGG----------GGCCGCUCGu-------UG-GCGUGG- -5'
6473 5' -62 NC_001847.1 + 2865 0.76 0.181364
Target:  5'- --aGCGCCCaggccgaCGcGCGGGCcGCCGCGCCg -3'
miRNA:   3'- gagCGCGGG-------GC-CGCUCGuUGGCGUGG- -5'
6473 5' -62 NC_001847.1 + 2897 0.7 0.417419
Target:  5'- -gCGCGUCgaguaCCGcGCGAGCGGggccacgguCCGCGCCg -3'
miRNA:   3'- gaGCGCGG-----GGC-CGCUCGUU---------GGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.