miRNA display CGI


Results 1 - 20 of 1224 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6473 5' -62 NC_001847.1 + 121 0.67 0.553929
Target:  5'- -cCGCGCCCCGGCcccGC--CCGCGg- -3'
miRNA:   3'- gaGCGCGGGGCCGcu-CGuuGGCGUgg -5'
6473 5' -62 NC_001847.1 + 145 0.73 0.265041
Target:  5'- cCUCGgGCCCCGGcCGGGgGGCCGgGg- -3'
miRNA:   3'- -GAGCgCGGGGCC-GCUCgUUGGCgUgg -5'
6473 5' -62 NC_001847.1 + 241 0.68 0.487029
Target:  5'- cCUCGCGCCCCgacgcccGGCGcccaggggcccgAGCccgggGGCCGCcgaGCCc -3'
miRNA:   3'- -GAGCGCGGGG-------CCGC------------UCG-----UUGGCG---UGG- -5'
6473 5' -62 NC_001847.1 + 311 0.68 0.487946
Target:  5'- -cCGCGCCCCGcCgGAGCu-UCGCGCUc -3'
miRNA:   3'- gaGCGCGGGGCcG-CUCGuuGGCGUGG- -5'
6473 5' -62 NC_001847.1 + 359 0.75 0.195417
Target:  5'- uUCGCGCCCCGGgGcccgccccGCGcGCCGCGCg -3'
miRNA:   3'- gAGCGCGGGGCCgCu-------CGU-UGGCGUGg -5'
6473 5' -62 NC_001847.1 + 486 0.66 0.651838
Target:  5'- --aGCGgCggCGGCgGGGCGGCCGCGCg -3'
miRNA:   3'- gagCGCgGg-GCCG-CUCGUUGGCGUGg -5'
6473 5' -62 NC_001847.1 + 612 0.68 0.497161
Target:  5'- gCUC-CGCagCGGCGcGCGGCCcGCGCCu -3'
miRNA:   3'- -GAGcGCGggGCCGCuCGUUGG-CGUGG- -5'
6473 5' -62 NC_001847.1 + 615 0.75 0.199672
Target:  5'- -aCGCGCCCCGuguaccaccacauGCGccGCGGCCGCACg -3'
miRNA:   3'- gaGCGCGGGGC-------------CGCu-CGUUGGCGUGg -5'
6473 5' -62 NC_001847.1 + 747 0.67 0.553929
Target:  5'- -gCGgGCCCCccuagGGCGAGgcCGGCC-CGCCg -3'
miRNA:   3'- gaGCgCGGGG-----CCGCUC--GUUGGcGUGG- -5'
6473 5' -62 NC_001847.1 + 875 0.67 0.553929
Target:  5'- -aCGCGCggCGGCG-GC--CCGCGCCg -3'
miRNA:   3'- gaGCGCGggGCCGCuCGuuGGCGUGG- -5'
6473 5' -62 NC_001847.1 + 936 0.66 0.641013
Target:  5'- -cCGcCGCCCuCGGCccGCGcgcgccgcuccacGCUGCGCCg -3'
miRNA:   3'- gaGC-GCGGG-GCCGcuCGU-------------UGGCGUGG- -5'
6473 5' -62 NC_001847.1 + 948 0.73 0.265041
Target:  5'- -cCGCGCCCgGG-GA-CGACUGCGCCg -3'
miRNA:   3'- gaGCGCGGGgCCgCUcGUUGGCGUGG- -5'
6473 5' -62 NC_001847.1 + 991 0.7 0.409045
Target:  5'- uUC-CGCCgCGGCG-GCGGCaCGCGCUc -3'
miRNA:   3'- gAGcGCGGgGCCGCuCGUUG-GCGUGG- -5'
6473 5' -62 NC_001847.1 + 1024 0.67 0.583049
Target:  5'- -cCGcCGCCCgCGGCGcgccGCAGCaGCACg -3'
miRNA:   3'- gaGC-GCGGG-GCCGCu---CGUUGgCGUGg -5'
6473 5' -62 NC_001847.1 + 1096 0.67 0.544315
Target:  5'- --gGCGCCgCGGCcgcGGGCGgcGCCGCcgcgGCCu -3'
miRNA:   3'- gagCGCGGgGCCG---CUCGU--UGGCG----UGG- -5'
6473 5' -62 NC_001847.1 + 1115 0.7 0.417419
Target:  5'- -gCGUGCCCCuGCGAcGCuggcgaGACCGC-CCg -3'
miRNA:   3'- gaGCGCGGGGcCGCU-CG------UUGGCGuGG- -5'
6473 5' -62 NC_001847.1 + 1155 0.73 0.253147
Target:  5'- -gCGCgGCUCCGGCaGcGCGGCCGCGCa -3'
miRNA:   3'- gaGCG-CGGGGCCG-CuCGUUGGCGUGg -5'
6473 5' -62 NC_001847.1 + 1367 0.73 0.259038
Target:  5'- cCUUGCGCCCguCGaGCGccGGCAGCaCGCGCUg -3'
miRNA:   3'- -GAGCGCGGG--GC-CGC--UCGUUG-GCGUGG- -5'
6473 5' -62 NC_001847.1 + 1406 0.66 0.63215
Target:  5'- aCUCGCGCggCGGCacGGGC-ACCGCGgUg -3'
miRNA:   3'- -GAGCGCGggGCCG--CUCGuUGGCGUgG- -5'
6473 5' -62 NC_001847.1 + 1498 0.68 0.487946
Target:  5'- --gGCGCCUCGGgGuAG-AGCCGCGCg -3'
miRNA:   3'- gagCGCGGGGCCgC-UCgUUGGCGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.