miRNA display CGI


Results 1 - 20 of 1224 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6473 5' -62 NC_001847.1 + 77363 0.65 0.658718
Target:  5'- --aGCGgccaccagCCCGGCGAGCAccagcagccccgugGCCagcGCGCCg -3'
miRNA:   3'- gagCGCg-------GGGCCGCUCGU--------------UGG---CGUGG- -5'
6473 5' -62 NC_001847.1 + 58720 0.65 0.657735
Target:  5'- gUCGCGgccaccccgggcucCUCCGGCGgcccgacagcggcGGCGGCCGCGa- -3'
miRNA:   3'- gAGCGC--------------GGGGCCGC-------------UCGUUGGCGUgg -5'
6473 5' -62 NC_001847.1 + 81707 0.66 0.612462
Target:  5'- -gCGCGCUgCGGCacGCGcgcGCCGaCGCCa -3'
miRNA:   3'- gaGCGCGGgGCCGcuCGU---UGGC-GUGG- -5'
6473 5' -62 NC_001847.1 + 28481 0.66 0.612462
Target:  5'- -aCGCGCCgCGGac-GCcGCgGCGCCg -3'
miRNA:   3'- gaGCGCGGgGCCgcuCGuUGgCGUGG- -5'
6473 5' -62 NC_001847.1 + 72044 0.66 0.602636
Target:  5'- --gGCgGCCCCGGgGcGUAcccggucCCGCACCa -3'
miRNA:   3'- gagCG-CGGGGCCgCuCGUu------GGCGUGG- -5'
6473 5' -62 NC_001847.1 + 36139 0.66 0.602636
Target:  5'- -gCGCGCCgCGGaCGcgggccuGCAGCgGCugCa -3'
miRNA:   3'- gaGCGCGGgGCC-GCu------CGUUGgCGugG- -5'
6473 5' -62 NC_001847.1 + 93028 0.66 0.602636
Target:  5'- -aCGCGggaagcggcCCCCGGCGccuggacGguGCCGgCACCg -3'
miRNA:   3'- gaGCGC---------GGGGCCGCu------CguUGGC-GUGG- -5'
6473 5' -62 NC_001847.1 + 122849 0.66 0.602636
Target:  5'- -cCGCGCCCUGGCuuguggugcuGGUGGgCGCGCUu -3'
miRNA:   3'- gaGCGCGGGGCCGc---------UCGUUgGCGUGG- -5'
6473 5' -62 NC_001847.1 + 79981 0.66 0.601654
Target:  5'- -gCGCGCCCCgcgucuggccgcuGGgGGGCucuACgCGCGCg -3'
miRNA:   3'- gaGCGCGGGG-------------CCgCUCGu--UG-GCGUGg -5'
6473 5' -62 NC_001847.1 + 42248 0.66 0.612462
Target:  5'- uUgGCGUCggUGGUGGGCAGCaGCACCu -3'
miRNA:   3'- gAgCGCGGg-GCCGCUCGUUGgCGUGG- -5'
6473 5' -62 NC_001847.1 + 42745 0.66 0.612462
Target:  5'- gCUgGCGCCCCccUGGGUGGCCGacuaCGCCa -3'
miRNA:   3'- -GAgCGCGGGGccGCUCGUUGGC----GUGG- -5'
6473 5' -62 NC_001847.1 + 82636 0.66 0.602636
Target:  5'- -cCGCGCucuuuugccaCCCGaacccGCGAGCGcggcgcGCCGCGCUc -3'
miRNA:   3'- gaGCGCG----------GGGC-----CGCUCGU------UGGCGUGG- -5'
6473 5' -62 NC_001847.1 + 42374 0.66 0.602636
Target:  5'- --aGCGCCUCGGgGGGgAugagcucgcggaGCCGCAUg -3'
miRNA:   3'- gagCGCGGGGCCgCUCgU------------UGGCGUGg -5'
6473 5' -62 NC_001847.1 + 115686 0.66 0.609513
Target:  5'- -gCGCGCggcggagcggcuggCCCGGC-AGCGGgCGCGCg -3'
miRNA:   3'- gaGCGCG--------------GGGCCGcUCGUUgGCGUGg -5'
6473 5' -62 NC_001847.1 + 40286 0.66 0.609513
Target:  5'- -cCGCGCCCCccaaggucccccucGGCGcAGacuCCGaCGCCa -3'
miRNA:   3'- gaGCGCGGGG--------------CCGC-UCguuGGC-GUGG- -5'
6473 5' -62 NC_001847.1 + 53906 0.66 0.611479
Target:  5'- cCUCGCgacgGCCCCgcccggaGGCGAcgGCGACgGCGgCu -3'
miRNA:   3'- -GAGCG----CGGGG-------CCGCU--CGUUGgCGUgG- -5'
6473 5' -62 NC_001847.1 + 77040 0.66 0.602636
Target:  5'- -cCGCGCCgCagaaguaguagCGGCGcGGCAcCCGCugCg -3'
miRNA:   3'- gaGCGCGG-G-----------GCCGC-UCGUuGGCGugG- -5'
6473 5' -62 NC_001847.1 + 91668 0.66 0.612462
Target:  5'- uCUCGCgGCUgCGGCu-GCGGCUGCGgCu -3'
miRNA:   3'- -GAGCG-CGGgGCCGcuCGUUGGCGUgG- -5'
6473 5' -62 NC_001847.1 + 21358 0.66 0.612462
Target:  5'- -gCGCGCCgUCGGCG-GCucgGGCCGCcUCg -3'
miRNA:   3'- gaGCGCGG-GGCCGCuCG---UUGGCGuGG- -5'
6473 5' -62 NC_001847.1 + 62788 0.66 0.611479
Target:  5'- -cUGgGCCCgGGgGGGCGagaucgcgcacaaGCCGgGCCg -3'
miRNA:   3'- gaGCgCGGGgCCgCUCGU-------------UGGCgUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.