miRNA display CGI

Results 1 - 20 of 1224 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6473	5'	-62	NC_001847.1	+	37936	1.12	0.000512
	Target:  5'- aCUCGCGCCCCGGCGAGCAACCGCACCg -3' miRNA:   3'- -GAGCGCGGGGCCGCUCGUUGGCGUGG- -5'
6473	5'	-62	NC_001847.1	+	6342	0.91	0.016503
	Target:  5'- --gGUGCCCCGGCG-GCAACCGCGCCg -3' miRNA:   3'- gagCGCGGGGCCGCuCGUUGGCGUGG- -5'
6473	5'	-62	NC_001847.1	+	71803	0.83	0.055277
	Target:  5'- -aCGCGCCCCugggcGGCGAGCAggagcacGCCGCGCUg -3' miRNA:   3'- gaGCGCGGGG-----CCGCUCGU-------UGGCGUGG- -5'
6473	5'	-62	NC_001847.1	+	100376	0.83	0.056881
	Target:  5'- -cCGCGgCCgCGGCGcGCAGCCGCGCCa -3' miRNA:   3'- gaGCGCgGG-GCCGCuCGUUGGCGUGG- -5'
6473	5'	-62	NC_001847.1	+	120754	0.82	0.064759
	Target:  5'- cCUCGCGCCagcuCGGCGAGCcucuacGACCGCGCg -3' miRNA:   3'- -GAGCGCGGg---GCCGCUCG------UUGGCGUGg -5'
6473	5'	-62	NC_001847.1	+	10695	0.81	0.073684
	Target:  5'- gUCGCGCCCgGGCGcGGC--CCGCGCCg -3' miRNA:   3'- gAGCGCGGGgCCGC-UCGuuGGCGUGG- -5'
6473	5'	-62	NC_001847.1	+	113508	0.81	0.073684
	Target:  5'- gUCGCGCCCgGGCGcGGC--CCGCGCCg -3' miRNA:   3'- gAGCGCGGGgCCGC-UCGuuGGCGUGG- -5'
6473	5'	-62	NC_001847.1	+	36975	0.81	0.081663
	Target:  5'- -gCGgGCgCCGGCGAGCGGgcCCGCGCCg -3' miRNA:   3'- gaGCgCGgGGCCGCUCGUU--GGCGUGG- -5'
6473	5'	-62	NC_001847.1	+	21511	0.81	0.083783
	Target:  5'- -gCGCGCCUCGGCGGG-GGCCGCGCg -3' miRNA:   3'- gaGCGCGGGGCCGCUCgUUGGCGUGg -5'
6473	5'	-62	NC_001847.1	+	75365	0.81	0.083783
	Target:  5'- -gCGCGUCUCGGCGGGCAugggcACgGCACCg -3' miRNA:   3'- gaGCGCGGGGCCGCUCGU-----UGgCGUGG- -5'
6473	5'	-62	NC_001847.1	+	49511	0.81	0.083783
	Target:  5'- -aCGCGCgCCuGCGAGCAAgCGCGCCg -3' miRNA:   3'- gaGCGCGgGGcCGCUCGUUgGCGUGG- -5'
6473	5'	-62	NC_001847.1	+	99692	0.8	0.0928
	Target:  5'- uCUCGCGCCgCGGCc-GCGucgcGCCGCACCg -3' miRNA:   3'- -GAGCGCGGgGCCGcuCGU----UGGCGUGG- -5'
6473	5'	-62	NC_001847.1	+	59278	0.8	0.095194
	Target:  5'- uCUCGaGCCCCGGCG-GCGggaaACCGUACCc -3' miRNA:   3'- -GAGCgCGGGGCCGCuCGU----UGGCGUGG- -5'
6473	5'	-62	NC_001847.1	+	70715	0.8	0.095194
	Target:  5'- --gGCGCCCgCGGCGAGCGcgaggacaGCCGCuGCCa -3' miRNA:   3'- gagCGCGGG-GCCGCUCGU--------UGGCG-UGG- -5'
6473	5'	-62	NC_001847.1	+	9670	0.8	0.097647
	Target:  5'- cCUCGCGCCCgCcGCGAGCuGCCGCcgACCc -3' miRNA:   3'- -GAGCGCGGG-GcCGCUCGuUGGCG--UGG- -5'
6473	5'	-62	NC_001847.1	+	11312	0.8	0.097647
	Target:  5'- -gCGCGCCCgccgaggcCGGCGGGCGGCUgGCGCCg -3' miRNA:   3'- gaGCGCGGG--------GCCGCUCGUUGG-CGUGG- -5'
6473	5'	-62	NC_001847.1	+	73704	0.79	0.105367
	Target:  5'- cCUCGcCGCgCCCGGCGGcGCGGCCGCgggcgucgaggGCCg -3' miRNA:   3'- -GAGC-GCG-GGGCCGCU-CGUUGGCG-----------UGG- -5'
6473	5'	-62	NC_001847.1	+	58065	0.79	0.105367
	Target:  5'- gCUCGCGCUUCGGCG-GCGAgCGcCGCCg -3' miRNA:   3'- -GAGCGCGGGGCCGCuCGUUgGC-GUGG- -5'
6473	5'	-62	NC_001847.1	+	96540	0.79	0.108066
	Target:  5'- -gCGCGCgCCGGCuGuGCAGCCGCGCg -3' miRNA:   3'- gaGCGCGgGGCCG-CuCGUUGGCGUGg -5'
6473	5'	-62	NC_001847.1	+	67062	0.79	0.108066
	Target:  5'- gCUCGCGCCgCGGCGuucgccccgccGCAGgCGCGCCg -3' miRNA:   3'- -GAGCGCGGgGCCGCu----------CGUUgGCGUGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home