miRNA display CGI


Results 41 - 60 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 3' -56.8 NC_001847.1 + 59443 0.66 0.851494
Target:  5'- cCGCGGCcCGUggCcCGAgCGGCUCUACa -3'
miRNA:   3'- -GCGUCGcGCAa-GcGCUaGUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 116960 0.66 0.851494
Target:  5'- uCGCcGCGCGUcCGCcAUgGGC-CCGCu -3'
miRNA:   3'- -GCGuCGCGCAaGCGcUAgUCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 86100 0.66 0.851494
Target:  5'- gCGCAGCuuuacGCGcaCGCugcacGAgCGGCUCCGCg -3'
miRNA:   3'- -GCGUCG-----CGCaaGCG-----CUaGUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 86587 0.66 0.851494
Target:  5'- gGCGGCGC-UUCGUucuuuacgCGGCUCCGg -3'
miRNA:   3'- gCGUCGCGcAAGCGcua-----GUCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 115709 0.66 0.851494
Target:  5'- gGCAGCGgGcgCGCGGccuUUGGCgcucCCGCu -3'
miRNA:   3'- gCGUCGCgCaaGCGCU---AGUCGa---GGUG- -5'
6474 3' -56.8 NC_001847.1 + 68065 0.66 0.851494
Target:  5'- uCGCGGCGCGccUGCGGcggGGCgaacgCCGCg -3'
miRNA:   3'- -GCGUCGCGCaaGCGCUag-UCGa----GGUG- -5'
6474 3' -56.8 NC_001847.1 + 4578 0.66 0.851494
Target:  5'- aGUGGUGCGggUCGCGGUgcgCGGCgacgaaggcggCCACg -3'
miRNA:   3'- gCGUCGCGCa-AGCGCUA---GUCGa----------GGUG- -5'
6474 3' -56.8 NC_001847.1 + 30242 0.66 0.851494
Target:  5'- aGguGCGCGUgucgcUgGCGGcguugCAGCgcgCCGCg -3'
miRNA:   3'- gCguCGCGCA-----AgCGCUa----GUCGa--GGUG- -5'
6474 3' -56.8 NC_001847.1 + 45309 0.66 0.8507
Target:  5'- gGCAaaguuucGCGCGUUgGcCGcgC-GCUCCACg -3'
miRNA:   3'- gCGU-------CGCGCAAgC-GCuaGuCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 22751 0.66 0.848308
Target:  5'- gCGCGGCGCGcaaccaaauaaacUCGCGcUCAauuuccacGCUUCGCg -3'
miRNA:   3'- -GCGUCGCGCa------------AGCGCuAGU--------CGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 1944 0.66 0.84428
Target:  5'- gCGCGGCGCagagcuccuccaGCGAgggCAGC-CCGCg -3'
miRNA:   3'- -GCGUCGCGcaag--------CGCUa--GUCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 17282 0.66 0.843469
Target:  5'- uGCAgGCGCGUggagCGCGGcggguaguacUCGGCggCGCg -3'
miRNA:   3'- gCGU-CGCGCAa---GCGCU----------AGUCGagGUG- -5'
6474 3' -56.8 NC_001847.1 + 9735 0.66 0.843469
Target:  5'- gGCGGCGcCGgggcagUCGCcGUCGG-UCCACc -3'
miRNA:   3'- gCGUCGC-GCa-----AGCGcUAGUCgAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 73242 0.66 0.843469
Target:  5'- gGCGGCGCGggCGCGcUCgaGGCcgUgCGCg -3'
miRNA:   3'- gCGUCGCGCaaGCGCuAG--UCG--AgGUG- -5'
6474 3' -56.8 NC_001847.1 + 88909 0.66 0.843469
Target:  5'- gGCGGCucccuuGCG--CGCGcgCGGCUCUGCg -3'
miRNA:   3'- gCGUCG------CGCaaGCGCuaGUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 29455 0.66 0.843469
Target:  5'- gCGCGGCGCGgcggccCGCGcGUCGGC-CUg- -3'
miRNA:   3'- -GCGUCGCGCaa----GCGC-UAGUCGaGGug -5'
6474 3' -56.8 NC_001847.1 + 112976 0.66 0.843469
Target:  5'- uCGCGGCGCGaUCGUG-UCcaccacguGCUUUACa -3'
miRNA:   3'- -GCGUCGCGCaAGCGCuAGu-------CGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 132268 0.66 0.843469
Target:  5'- gCGCGGCGCGgcggccCGCGcGUCGGC-CUg- -3'
miRNA:   3'- -GCGUCGCGCaa----GCGC-UAGUCGaGGug -5'
6474 3' -56.8 NC_001847.1 + 94243 0.66 0.83525
Target:  5'- gCGCGGCGcCGUggagcggcUCGCGccCuGCgUCCACg -3'
miRNA:   3'- -GCGUCGC-GCA--------AGCGCuaGuCG-AGGUG- -5'
6474 3' -56.8 NC_001847.1 + 78705 0.66 0.83525
Target:  5'- gGCAGCacGCGagUGCGggCGGUcuUCCGCg -3'
miRNA:   3'- gCGUCG--CGCaaGCGCuaGUCG--AGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.