miRNA display CGI


Results 41 - 60 of 807 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6475 5' -63.4 NC_001847.1 + 66479 0.66 0.565013
Target:  5'- uGUg-CGCGGCaCGUCGUGCGuGUcgGCCa -3'
miRNA:   3'- uCGagGCGCCG-GCAGCGUGC-CGa-CGG- -5'
6475 5' -63.4 NC_001847.1 + 42018 0.66 0.565013
Target:  5'- aAGCUgCGcCGuGCCG--GCGCGGC-GCCu -3'
miRNA:   3'- -UCGAgGC-GC-CGGCagCGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 105704 0.66 0.565013
Target:  5'- cGCgCCGCGcGUCGaguacCGCGCGaGCgggGCCa -3'
miRNA:   3'- uCGaGGCGC-CGGCa----GCGUGC-CGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 27878 0.66 0.565013
Target:  5'- cGCUCgaGCGGUUggauggcgagGUCGC-CGGCccgGCCg -3'
miRNA:   3'- uCGAGg-CGCCGG----------CAGCGuGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 43216 0.66 0.565013
Target:  5'- uGCUCgGC-GCCGUUGCcCGGUgGCg -3'
miRNA:   3'- uCGAGgCGcCGGCAGCGuGCCGaCGg -5'
6475 5' -63.4 NC_001847.1 + 5894 0.66 0.565013
Target:  5'- gGGCggCCGC-GCCGUCGCAgauUGuGC-GCCc -3'
miRNA:   3'- -UCGa-GGCGcCGGCAGCGU---GC-CGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 38713 0.66 0.565013
Target:  5'- uGcCUCCGgGGCCG-CGCcugccgcCGGCcccGCCa -3'
miRNA:   3'- uC-GAGGCgCCGGCaGCGu------GCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 62458 0.66 0.562119
Target:  5'- cGCUCUcccCGGCCucagcagggccgggGUCGC-CGGCgggcgGCCg -3'
miRNA:   3'- uCGAGGc--GCCGG--------------CAGCGuGCCGa----CGG- -5'
6475 5' -63.4 NC_001847.1 + 34248 0.66 0.561155
Target:  5'- cGCggCGCGGCgCGaggcgcagaccggCGCGCGGCgGCUg -3'
miRNA:   3'- uCGagGCGCCG-GCa------------GCGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 43710 0.66 0.559228
Target:  5'- uGCUUugCGCGcGCUG-CGCGCGGacgugguggcgcacuCUGCCa -3'
miRNA:   3'- uCGAG--GCGC-CGGCaGCGUGCC---------------GACGG- -5'
6475 5' -63.4 NC_001847.1 + 84589 0.66 0.559228
Target:  5'- aGGCgacgCCGCGGUccagcagcgccgcugCGUCGCcuuCGaGCgggGCCa -3'
miRNA:   3'- -UCGa---GGCGCCG---------------GCAGCGu--GC-CGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 32275 0.66 0.555381
Target:  5'- uGGCU-CGC-GCCGUcCGCGUGGCgcgGCCc -3'
miRNA:   3'- -UCGAgGCGcCGGCA-GCGUGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 52514 0.66 0.555381
Target:  5'- gAGCg-CGCGGCCG-CGCggcccgggggAUGGUcGCCg -3'
miRNA:   3'- -UCGagGCGCCGGCaGCG----------UGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 60981 0.66 0.555381
Target:  5'- cGCUgCGCGcgcccacggcGCCGUCGa--GGCcGCCa -3'
miRNA:   3'- uCGAgGCGC----------CGGCAGCgugCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 19311 0.66 0.555381
Target:  5'- gAGCgcggCCGCGGCCGU-----GGCUGUUa -3'
miRNA:   3'- -UCGa---GGCGCCGGCAgcgugCCGACGG- -5'
6475 5' -63.4 NC_001847.1 + 51382 0.66 0.555381
Target:  5'- cGCUCgCGgaGGCCG-CGguCGCGGC-GCCg -3'
miRNA:   3'- uCGAG-GCg-CCGGCaGC--GUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 6359 0.66 0.555381
Target:  5'- cGCgCCGCGGgCGUagcCGCuGCGGCaGCa -3'
miRNA:   3'- uCGaGGCGCCgGCA---GCG-UGCCGaCGg -5'
6475 5' -63.4 NC_001847.1 + 132152 0.66 0.555381
Target:  5'- gAGCgCgCGCGGCUccagCGCGCGGCcccgGCg -3'
miRNA:   3'- -UCGaG-GCGCCGGca--GCGUGCCGa---CGg -5'
6475 5' -63.4 NC_001847.1 + 105557 0.66 0.555381
Target:  5'- cGGCcCC-CGGCCcg-GCGCGGCggcGCCg -3'
miRNA:   3'- -UCGaGGcGCCGGcagCGUGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 28189 0.66 0.555381
Target:  5'- uGGCggCCGCGcGCCugcgCGcCACGGCggcguucgGCCc -3'
miRNA:   3'- -UCGa-GGCGC-CGGca--GC-GUGCCGa-------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.